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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGAACATCTTTGCACCACCGCCTGAGATCAAACCTCGATCTGGAACTAATCGTGCATTGGCTCTTAAGGACAATTTCAACCTCGGAGCTGAATCTCAAgtaagacttttccaatgtgtttcttgatatctcttagcaatcattgttatatatagtctaatcagagaaacgctattctgcag

Basic information

species Arabidopsis thaliana
transcript AT1G78150.3
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163988949|gb|ES034520.1|ES034520
EST:     ATCGTGCATTGGCTCTTAAGGACAATTTCAACCTCGGAGCTGAATCTCAA                         ACTGCTGAAGAAGACTCATC
genomic: ATCGTGCATTGGCTCTTAAGGACAATTTCAACCTCGGAGCTGAATCTCAAgtaagacttt ... tattctgcagACTGCTGAAGAAGACTCATC
EST: gi|125205098|gb|EL220052.1|EL220052
EST:     ATCGTGCATTGGCTCTTAAGGACAATTTCAACCTCGGAGCTGAATCTCAA                         ACTGCTGAAGAAGACTCAT
genomic: ATCGTGCATTGGCTCTTAAGGACAATTTCAACCTCGGAGCTGAATCTCAAgtaagacttt ... tattctgcagACTGCTGAAGAAGACTCAT
EST: gi|164062812|gb|ES013495.1|ES013495
EST:     ATCGTGCATTGGCTCTTAAGGACAATTTCAACCTCGGAGCTGAATCTCAA                         ACTGCTGAAGAAGACTCAT
genomic: ATCGTGCATTGGCTCTTAAGGACAATTTCAACCTCGGAGCTGAATCTCAAgtaagacttt ... tattctgcagACTGCTGAAGAAGACTCAT
EST: gi|164109339|gb|ES082285.1|ES082285
EST:     ATCGTGCATTGGCTCTTAAGGACAATTTCAACCTCGGAGCTGAATCTCAA                         ACTGCTGAAGAAGACTCATCTGTGAAGACAGCAAAG
genomic: ATCGTGCATTGGCTCTTAAGGACAATTTCAACCTCGGAGCTGAATCTCAAgtaagacttt ... tattctgcagACTGCTGAAGAAGACTCATCTGTGAAGACAGCAAAG
EST: gi|124854276|gb|EH938713.1|EH938713
EST:     ATCGTGCATTGGCTCTTAAGGACAATTTCAACCTCGGAGCTGAATCTCAA                         ACTGCTGAAGAAGACTCATCTGTGAAG
genomic: ATCGTGCATTGGCTCTTAAGGACAATTTCAACCTCGGAGCTGAATCTCAAgtaagacttt ... tattctgcagACTGCTGAAGAAGACTCATCTGTGAAG
EST: gi|125013896|gb|EL086165.1|EL086165
EST:     ATCGTGCATTGGCTCTTAAGGACAATTTCAACCTCGGAGCTGAATCTCAA                         ACTGCTGAAGAAGAACTCATCTGTGAAGACAGCAAAG
genomic: ATCGTGCATTGGCTCTTAAGGACAATTTCAACCTCGGAGCTGAATCTCAAgtaagacttt ... tattctgcagACTGCTGAAGAAGA-CTCATCTGTGAAGACAGCAAAG
EST: gi|124720038|gb|EH811440.1|EH811440
EST:     AATTTCAACCTCGGAGCTGAATCTCAA                         ACTGCTGAAGAAGACTCATCTGTGAAGACAGCAAAGAAGATTTATGACAAG
genomic: AATTTCAACCTCGGAGCTGAATCTCAAgtaagacttt ... tattctgcagACTGCTGAAGAAGACTCATCTGTGAAGACAGCAAAGAAGATTTATGACAAG
EST: gi|125314252|gb|EL328337.1|EL328337
EST:     AGGACAATTTCAACCTCGGAGCTGAATCTCAA                         ACTGCTGAAGAAGACTCATCTGTGAAGACAGCAAAGAAGATTTATGACAAG
genomic: AGGACAATTTCAACCTCGGAGCTGAATCTCAAgtaagacttt ... tattctgcagACTGCTGAAGAAGACTCATCTGTGAAGACAGCAAAGAAGATTTATGACAAG
EST: gi|164003868|gb|ES107965.1|ES107965
EST:     ATCGTGCATTGGCTCTTAAGGACAATTTCAACCTCGGAGCTGAATCTCAA                         ACTGCTGAAGAAGACTCATC
genomic: ATCGTGCATTGGCTCTTAAGGACAATTTCAACCTCGGAGCTGAATCTCAAgtaagacttt ... tattctgcagACTGCTGAAGAAGACTCATC
EST: gi|125296002|gb|EL310087.1|EL310087
EST:     CAACCTCGGAGCTGAATCTCAA                         ACTGCTGAAGAAGACTCATCTGTGAAGACAGCAAAGAAGATTCATGACAAG
genomic: CAACCTCGGAGCTGAATCTCAAgtaagacttt ... tattctgcagACTGCTGAAGAAGACTCATCTGTGAAGACAGCAAAGAAGATTTATGACAAG
EST: gi|164038536|gb|ES199597.1|ES199597
EST:     GCTGAATCTCAA                         ACTGCTGAAGAAGACTCATCTGTGAAGACAGCAAAGAAGATTTATGACAAG
genomic: GCTGAATCTCAAgtaagacttt ... tattctgcagACTGCTGAAGAAGACTCATCTGTGAAGACAGCAAAGAAGATTTATGACAAG
EST: gi|125247885|gb|EL261970.1|EL261970
EST:     ATCGTGCATTGGCTCTTAAGGACAATTTCAACCTCGGAGCTGAATCTCAA                         ACTGCTGAAGAAGACTCATCTGTGAA
genomic: ATCGTGCATTGGCTCTTAAGGACAATTTCAACCTCGGAGCTGAATCTCAAgtaagacttt ... tattctgcagACTGCTGAAGAAGACTCATCTGTGAA
EST: gi|124720864|gb|EH812266.1|EH812266
EST:     ATCGTGCATTGGCTCTTAAGGACAATTTCAACCTCGGAGCTGAATCTCAA                         ACTGCTGAAGAAGACTCATCTGTGAAGAC
genomic: ATCGTGCATTGGCTCTTAAGGACAATTTCAACCTCGGAGCTGAATCTCAAgtaagacttt ... tattctgcagACTGCTGAAGAAGACTCATCTGTGAAGAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACAGAACATCTTTGCACCACCGCCTGAGATCAAACCTCGATCTGGAACTAATCGTGCATTGGCTCTTAAGGACAATTTCAACCTCGGAGCTGAATCTCAAgtaagacttttccaatgtgtttcttgatatctcttagcaatcattgttatatatagtctaatcagagaaacgctattctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA