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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTTCCTTCCACAATTATAGAATTTGGTCATTCCTCGGACTCGCTATGACCACTTACACTTCTTGGTATCTCACCATTGCTTCACTCCTTCATGGCCAGgtcattataattaacacaaatcttgttttgattattataagatatagacatatagtcctggttattgttgtttaatatatttatttttcatataaaaaag

Basic information

species Arabidopsis thaliana
transcript AT1G77690.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G77690.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA04G43150.2 (Glycine max), 5'ss of exon 5
TCCTTCCTTCCACAATTATAGAATTTGGTCATTCCTCGGACTCGCTATGACCACTTACACTTCTTGGTATCTCACCATTGCTTCACTCCTTCATGGCCAGgtcattataattaacacaaatcttgttttg-attattataagatatagacatatagtcc--tggttattgttg--tttaatatatttatttttcatataaaaaag-------------------------------------
 ||||| ||||||||||| ||||| ||||||||| | || ||||  ||||||||||||||| | |||||| | ||||| ||||| ||    ||||||||||| |  | | |  | |   |      |  | || || |||| ||  |  || ||  |    || ||  |      | | |||||  |||| ||  |   ||                                         
CCCTTCTTTCCACAATTACAGAATGTGGTCATTCTTAGGCCTCGTGATGACCACTTACACTGCATGGTATATGACCATAGCTTCCCTTACCCATGGCCAGgtaaaaagactcgatatttaggagcctcagcatcatcataaaattaaagcaaatcatataatgattgctaacacatgtgatataagtattattgttgccaattttgtgttcttcaattaatattctgtgtgtttctctgaag

upper sequence: AT1G77690.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA06G11540.1 (Glycine max), 5'ss of exon 5
TCCTTCCTTCCACAATTATAGAATTTGGTCATTCCTCGGACTCGCTATGACCACTTACACTTCTTGGTATCTCACCATTGCTTCACTCCTTCATGGCCAGgtcattataattaacaca-aatcttgttttgattattataagatatagacatat--agtcctggttattgttg-----tttaatatatttatttttcatataaaaaag------------------------------------------
 ||||| |||||||| || ||||| ||||||||| | || ||||  ||||||||||||||| | |||||| | ||||| ||||| ||    ||||||||||| |  | | |  | |   |      |    || |  |||| ||  |  || ||  | |     | |||| |      | | ||||| | | | ||  | |    ||                                           
CCCTTCTTTCCACAACTACAGAATCTGGTCATTCTTGGGCCTCGTGATGACCACTTACACTGCATGGTATATGACCATAGCTTCCCTTACCCATGGCCAGgtaaaaagactcgatatttaggagcctcaacatcagcataaaattaaagcaaatcaaataacaatgattgctaacacatgtgatataataagtattattgttgctaattatttgtgttcttcaattaatattctgtgtgtttctctaaag

upper sequence: AT1G77690.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv18s0001g03540.t01 (Vitis vinifera), 5'ss of exon 4
TCCTTCCTTCCACAATTATAGAATTTGGTCATTCCTCGGACTCGCTATGACCACTTACACTTCTTGGTATCTCACCATTGCTTCACTCCTTCATGGCCAGgtcattataattaacacaaatc-ttgttttgattattataagatatagacatatagtcctggttattgt------tgtttaatatatttatttttcatataaaaaag-------------------------
|||||| ||||| ||||| ||||||||||||||| | || ||    |||||||| ||||||||||||||||| |||||||||||  |  | ||||| |||||   | || ||| |  || |   ||| || || | |      ||    || ||| | |   | ||           ||| ||| ||| |||| |    |||  ||                          
TCCTTCATTCCATAATTACAGAATTTGGTCATTCTTAGGCCTTATGATGACCACCTACACTTCTTGGTATCTAACCATTGCTTCCTTTATCCATGGGCAGgta--tgtatttaccttaattagctgtattcatcacttagttttaatttcaaataattcccataatcccatcccccctttgatacattgatttatttattaagtaatcccatgctgatttgcttgtttgaag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125234529|gb|EL248614.1|EL248614
EST:     CCACTTACACTTCTTGGTATCTCACCATTGCTTCACTCCTTCATGGCCAG                         GCTGAGGATGTG
genomic: CCACTTACACTTCTTGGTATCTCACCATTGCTTCACTCCTTCATGGCCAGgtcattataa ... tataaaaaagGCTGAGGATGTG