Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCATCCTGGTTTTGGTTTATCAGATGGTTTACATGGTCACATTCCAAGTTTTGATGACTTAGCAGACAATGCTATTGAACAGTTCACCAAAATGAAAGgtatatctaaattgtacctgttattgctttttggtgttgaatcttgcttttgggttttatttaagtggtttgattcctag

Basic information

species Arabidopsis thaliana
transcript AT1G77420.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G77420.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA20G25020.2 (Glycine max), 5'ss of exon 3
GACCATCCTGGTTTTGGTTTATCAGATGGTTTACATGGTCACATTCCAAGTTTTGATGACTTAGCAGACAATGCTATTGAACAGTTCACCAAAATGAAAGgtata----tctaa-attgtacctgtt--attgctttttggtgttgaatcttgcttttgggttttatttaagtggtttgattcctag-------------------------
||| |||| ||||||||| |||| || |||||||||||| |||| |||| ||||||||| || |  ||  | | ||| ||||| || || ||||| ||||||| |    | ||  ||  |  ||||   |||| |  ||| |||    | ||   | ||    |     | || || |  ||  |                           
GACTATCCAGGTTTTGGTCTATCTGAAGGTTTACATGGTTACATACCAAATTTTGATGATTTGGTTGATGACGTTATAGAACATTTTACAAAAATCAAAGgtaaaaccttttagcatcctggctgtcacattgatcattgttgtaatcttttatatgtgaaagtacagaatgttgtattgttgttgatcatgctttgtaattcaattgacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125295970|gb|EL310055.1|EL310055
EST:     ACTTAGCAGACAATGCTATTGAACAGTTCACCAAAATGAAAG                         GGAGATCGGAATTGAGAAATTTGCCCCGGTTTTTGCTAGGGACAGTCAATG
genomic: ACTTAGCAGACAATGCTATTGAACAGTTCACCAAAATGAAAGgtatatctaa ... tgattcctagGGAGATCGGAATTGAGAAATTTGCCCCGGTTTTTGCT-GGGACAGTCAATG
EST: gi|116486369|gb|EG528961.1|EG528961
EST:     TTTTGATGACTTAGCAGACAATGCTATTGAACAGTTCACCAAAATGAAAG                         GGAGATCGGAATTGAGAAATTTGCCCCGGTTTTTGCTGGGACAGTCAATGG
genomic: TTTTGATGACTTAGCAGACAATGCTATTGAACAGTTCACCAAAATGAAAGgtatatctaa ... tgattcctagGGAGATCGGAATTGAGAAATTTGCCCCGGTTTTTGCTGGGACAGTCAATGG