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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTTTGCGGAACTCGAATATGGAATGTTGCGTTACATGGGAGCCATTGATGATTCCACACCCGTTGTTACAACTGgtataaatacaatttagaagaaacctttatatacactttttcttttataccttggctcatgaagcttttacttcatttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G76730.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G76730.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA16G27960.1 (Glycine max), 5'ss of exon 4
GGTTTTGCGGAACTCGAATATGGAATGTTGCGTTACATGGGAGCCATTGATGATTCCACACCCGTTGTTACAACTGgtataaatacaatttagaagaaacctttatatacactttttctt-ttatacctt----ggctcatgaagcttttacttcatttgcag------------------
|| ||||| ||||| |||||||| ||| || | |||||||||||||| |||||||| ||||  ||||||||| ||||||    |    ||   ||    ||||||    |||||||  || | || ||||     | | |||  |    |  |  |    ||                   
GGATTTGCAGAACTTGAATATGGTATGCTGAGGTACATGGGAGCCATCGATGATTCAACACGAGTTGTTACATCTGgta--gttttggttcctaacctgcctttac---cacttttgtttgtcattcctttaaaagtttatggtgaacattttgaaaacacaatttcaacagctagagtaa

upper sequence: AT1G76730.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA02G08860.1 (Glycine max), 5'ss of exon 5
GGTTTTGCGGAACTCGAATATGGAATGTTGCGTTACATGGGAGCCATTGATGATTCCACACCCGTTGTTACAACTGgtataaatacaatttagaagaaaccttta-------tatacactttttcttttataccttggctcatgaagctttt---acttcatttgcag------------
||  |||| ||||| |||||||| ||| || | |||||||||||||| |||||||| ||||| ||||||||  ||||||    |    ||   ||    ||||||       | |   | ||| |||| | |  ||  ||| ||||  ||||   |   || || ||             
GGAATTGCAGAACTTGAATATGGTATGCTGAGGTACATGGGAGCCATCGATGATTCAACACCAGTTGTTACCTCTGgta--gttttggttcctaacctgcctttaccagttttgttagcctttcctttaaaagttt--ctcttgaacattttggaaacacaattccaacagctagagtaa

upper sequence: AT1G76730.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv18s0072g00300.t01 (Vitis vinifera), 5'ss of exon 4
GGTTTTGCGGAACTCGAATATGGAATGTTGCGTTACATGGGAGCCATTGATGATTCCACACCCGTTGTTACAACTGgtataaa------tacaatt-tagaagaaacctttatatacactttttcttttataccttggctcatgaagcttttac--ttcatttgcag---------
|| ||||| ||||| |||||||| |||||||| |||||||||||||| |||||  | || ||  |||| ||  | ||||   |      ||||| | | |  |  |   |||| |     ||||       | |  ||  |   || | |||    ||||||  |||         
GGGTTTGCAGAACTTGAATATGGGATGTTGCGGTACATGGGAGCCATAGATGACACTACTCCTATTGTCACCTCAGgtaagtaggtttctacaactattgttgctatgattatctgtttcttttggaggggatccaggtactgtaaccctttggcattcattctcagtatatcact

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164174179|gb|ES179786.1|ES179786
EST:     GTTGCGTTACATGGGAGCCATTGATGATTCCACACCCGTTGTTACAACTG                         TACATGATTGTCAGC
genomic: GTTGCGTTACATGGGAGCCATTGATGATTCCACACCCGTTGTTACAACTGgtataaatac ... tcatttgcagTACATGATTGTCAGC
EST: gi|86079362|gb|DR375119.1|DR375119
EST:     GTTGCGTTACATGGGAGCCATTGATGATTCCACACCCGTTGTTACAACTG                         TACATGATTGTCAGC-T-TAGATGATATACCTCTCGAGAAACTGGCGATTC
genomic: GTTGCGTTACATGGGAGCCATTGATGATTCCACACCCGTTGTTACAACTGgtataaatac ... tcatttgcagTACATGATTGTCAGCTTGTAGATGATATACCTCTCGAGAAACTGGCGATTC