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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGATGGATATCTTCAGAAAACCAGACGATGTGTTAACAGCTGCTGAGAAGTACATTGCAGAGAATGGACCTGATGCTTTTGAGAAGATCTTAAGCCGGgtatgtcatgtgttttgttctataagatctcttaacttctcattgacaaaaaaatgtgattcttctttacttctcttttcttgtatcttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G74520.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G74520.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv17s0000g05990.t01 (Vitis vinifera), 5'ss of exon 4
GAAGATGGATATCTTCAGAAAACCAGACGATGTGTTAACAGCTGCTGAGAAGTACATTGCAGAGAATGGACCTGATGCTTTTGAGAAGATCTTAAGCCGGgtatgtcatgtgttttgttctataagat--ctcttaacttctcattgacaaaaaaatgtgattcttctttacttctc--ttttcttgtatcttgcag---
||||| |||| ||||||| |||||||| ||  |  |||| ||||| ||||| ||||||  |||||||||||| ||||| |||||||| ||| | | | ||||| | ||    |     |  ||    |  |||||   || |    |          |         | | ||| |   |  |||||     | ||    
GAAGAAGGATGTCTTCAGTAAACCAGATGACATTCTAACTGCTGCGGAGAAATACATTCAAGAGAATGGACCAGATGCATTTGAGAATATCATTAACAGGgtaagccagcaatcacacttgattttttttctctttgttttttgggggtgggggggcggtggggaattgtgcttatggatgctcttgagaactacaacaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19878871|gb|AU239702.1|AU239702
EST:     AGTACATTGCAGAGAATGGACCTGATGCTTTTGAGAAGATCTTAAGCCGG                         GCTGATAAATCAAAAAGATATAATAAGCATGAATATGAAAGCTATGAAACG
genomic: AGTACATTGCAGAGAATGGACCTGATGCTTTTGAGAAGATCTTAAGCCGGgtatgtcatg ... tatcttgcagGCTGATAAATCAAAAAGATATAATAAGCATGAATATGAAAGCTATGAAACG