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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTAATTGTATGTGAACTTCTTAAGGCCAATCTATACGAATTCCACAAATTTAACAGAGAATCAGGTGGTGAAGTTTATTTCACGATGCCAAGATTGCAGgtttgtccgcttcatcattaacattcttaatagatatgtataaatccgagttctaatctctttgggatcgttctgtacag

Basic information

species Arabidopsis thaliana
transcript AT1G73460.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G73460.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os03g51020.1 (Oryza sativa), 5'ss of exon 4
GCTAATTGTATGTGAACTTCTTAAGGCCAATCTATACGAATTCCACAAATTTAACAGAGAATCAGGTGGTGAAGTTTATTTCACGATGCCAAGATTGCAGgt-ttgtccgct-------------------tcatcattaacattcttaatagatatgtataaatccga-gttctaatctctttgggatcgttctgtacag----------------------
||| || || ||||| ||||| ||||| ||| | || ||||| || || || |||||||||||||| || || || |||||||| ||||||||| ||||||| ||    |||                   |  | |||||  || ||| |     |  ||  |  | |  | | ||| | | ||  |    |   |                          
GCTTATAGTCTGTGAGCTTCTGAAGGCAAATTTGTATGAATTTCAAAAGTTCAACAGAGAATCAGGAGGCGAGGTCTATTTCACAATGCCAAGACTGCAGgtattactagctagctaataggatccagtaatggtgattaatgtttttactctcagtaaatggacacaatataccaatttttgtgacaataattgattttccttttgcgtaccctttctgcag

upper sequence: AT1G73460.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G181002_T01 (Zea mays), 5'ss of exon 4
GCTAATTGTATGTGAACTTCTTAAGGCCAATCTATACGAATTCCACAAATTTAACAGAGAATCAGGTGGTGAAGTTTATTTCACGATGCCAAGATTGCAGgtttgtcc--gcttcatcattaac-attcttaatagatatgtataaatccgagtt-ctaatctctttgggatcgttctgtacag--------------------------------------
||| || || ||||||||||| ||||| ||||| ||||| || || ||||| |||||||||||||| ||||| ||||| ||||| ||||||||| ||||||| |  |   |||   | ||  || | | || |   || ||| | | | | |||  | || | |  |   |   || |  |||                                       
GCTGATAGTCTGTGAACTTCTGAAGGCAAATCTGTACGAGTTTCAGAAATTCAACAGAGAATCAGGGGGTGAGGTTTACTTCACAATGCCAAGACTGCAGgtattactgagctaggttatccactaatgttgacttat-tgtttgactaccagtaacaaaacacgattctacaatttttcacatagatttgatatttttttctttgttgtaccccttggcag

upper sequence: AT1G73460.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G015073_T01 (Zea mays), 5'ss of exon 4
GCTAATTGTATGTGAACTTCTTAAGGCCAATCTATACGAATTCCACAAATTTAACAGAGAATCAGGTGGTGAAGTTTATTTCACGATGCCAAGATTGCAGg--tttgt----ccgcttcatcattaacattcttaatagat--atgtataaatccgagttctaatctctttggg-atcgttctgtacag------------------------------------
||| || || ||||||||||| ||||| ||||| || || || || ||||| |||||||||||||| ||||| ||||| ||||| ||||||||| | ||||  |||||    |||  | || ||   ||||  || |   |  |||| | |   | | |  |    | |  |   |   || |  |||                                     
GCTGATAGTCTGTGAACTTCTGAAGGCAAATCTGTATGAGTTTCAGAAATTCAACAGAGAATCAGGGGGTGAGGTTTACTTCACAATGCCAAGACTCCAGgtatttgttttaccgagttatgatgtccattaatattgacttaatgtttcacaaccaataatggaatatgagactacaatttttcacattgattgaatattttttctttgttgtgcccttggcag

upper sequence: AT1G73460.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA16G34510.1 (Glycine max), 5'ss of exon 4
GCTAATTGTATGTGAACTTCTTAAGGCCAATCTATACGAATTCCACAAATTTAACAGAGAATCAGGTGGTGAAGTTTATTTCACGATGCCAAGATTGCAGgtttgt-ccgcttcatcattaacattcttaatagatatgtataaatccga--gttctaatctctttgggatcgttctgtacag-----------------------------------------------
| |||| ||||||||||| ||||| |||||| |||| || || |||||||||||  |||||||||| || ||||| ||||||||||||||||||||||||||| || | |     | ||      | |  |||  ||  ||| |  | |   || ||    ||||| |  |   ||  | | |                                               
GTTAATAGTATGTGAACTACTTAAAGCCAATTTATATGAGTTTCACAAATTTAATCGAGAATCAGGGGGGGAAGTGTATTTCACGATGCCAAGATTGCAGgttagtgctgtgctgtgatatgttctttctatatttacttatcatgctgtttgtactgtgatctttagttttcatcctttctgctagtgcaatactgtcattataaacacttttcaacttatgtgtgcag

upper sequence: AT1G73460.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA09G29970.1 (Glycine max), 5'ss of exon 4
GCTAATTGTATGTGAACTTCTTAAGGCCAATCTATACGAATTCCACAAATTTAACAGAGAATCAGGTGGTGAAGTTTATTTCACGATGCCAAGATTGCAGgtttgtc-cgcttcatcattaacattcttaatagatatgtataaatccg--agttctaatctctttgggatcgttctgtacag--------------------------------------------
| |||| ||||||||||| ||||| |||||  |||| || || |||||||||||  |||||||||| |||||||| ||||||||||||||||| ||||||||||||   |   | | ||      | || |||  ||  ||| |  | |   || ||    ||||| |  |   ||  | | |                                            
GTTAATAGTATGTGAACTACTTAAAGCCAACTTATATGAGTTTCACAAATTTAATCGAGAATCAGGGGGTGAAGTGTATTTCACGATGCCAAGGTTGCAGgtttgtggtgtgccgtgatatgttctttttatatttacatatcatgctgtttgtactgtgatctttagttttcatcctttctgctagtctaatactgtcataaacacttttcaacttatgtgagcag

upper sequence: AT1G73460.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA08G06160.1 (Glycine max), 5'ss of exon 6
GCTAATTGTATGTGAACTTCTTAAGGCCAATCTATACGAATTCCACAAATTTAACAGAGAATCAGGTGGTGAAGTTTATTTCACGATGCCAAGATTGCAGgtttgt---ccgct-tcatcattaacattcttaatagatatgt-ataaatccgagttctaatctctttgggatcgttctgtacag
| |||| |||||||| || ||||| || ||  | || || || || |||||||| |||||||||||||||||||| || || || |||||||||||||||||||||     ||| |   | | |  ||  |||||    || | ||  || |   ||  || |||||  | || | | ||| |||
GTTAATAGTATGTGAGCTACTTAAAGCAAACTTGTATGAGTTTCATAAATTTAATAGAGAATCAGGTGGTGAAGTGTACTTTACAATGCCAAGATTGCAGgtttgtggtgtgctatttacttcatgatgtttaattttcatcttatctattctcattgcaaactcttctgaattgatgtgtgcag

upper sequence: AT1G73460.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA05G33560.1 (Glycine max), 5'ss of exon 4
GCTAATTGTATGTGAACTTCTTAAGGCCAATCTATACGAATTCCACAAATTTAACAGAGAATCAGGTGGTGAAGTTTATTTCACGATGCCAAGATTGCAGgtttgtc-cgcttcat---cattaacattcttaata--gatatgtataaatccgagttctaatctctttgggatcgttctgtacag
| |||| ||||||||||| ||||| || ||  | || || || || |||||||| |||||||||||||||||||| || || || |||||||||||||||||| |||  |   |||   | | |  ||  |||||    || | |   | ||  ||| | || |||||  | || | | ||| |||
GTTAATAGTATGTGAACTACTTAAAGCAAACTTGTATGAGTTTCATAAATTTAATAGAGAATCAGGTGGTGAAGTGTACTTTACAATGCCAAGATTGCAGgttcgtcgtgtgccatttacttcatgatgtttaattttaatcttttctattctcagtgcaaa-ctcttctgaattgatgtgtgcag

upper sequence: AT1G73460.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv01s0011g01590.t01 (Vitis vinifera), 5'ss of exon 10
GCTAATTGTATGTGAACTTCTTAAGGCCAATCTATACGAATTCCACAAATTTAACAGAGAATCAGGTGGTGAAGTTTATTTCACGATGCCAAGATTGCAGgtttgtccgcttcatcattaa-----cattcttaatagatatgtataaatccgagttctaatctctttgggatcgttctgtacag
  |||||||||| |||||||| ||||| ||  | || || || || |||||||| |||||||| || || || ||||| ||||| ||||||||||||||||||     | | |||  ||||      ||  ||      ||   | |     |  |   |    ||||   || ||||||| |||
ATTAATTGTATGCGAACTTCTCAAGGCAAACTTGTATGAGTTTCATAAATTTAATAGAGAATCCGGAGGGGAGGTTTACTTCACAATGCCAAGATTGCAGgttatggagttacatttttaaactgatatctttctctcctactgacatgctggtatgtaacctgcttttaaattgttctgtgcag

upper sequence: AT1G73460.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: PP1S47_312V6.1 (Physcomitrella patens), 5'ss of exon 5
GCTAATTGTATGTGAACTTCTTAAGGCCAATCTATACGAATTCCACAAATTTAACAGAGAATCAGGTGGTGAAGTTTATTTCACGATGCCAAGATTGCAGgtttgtccg----cttcatcattaacattcttaatagatatg----tataaatccga-gttctaatct--ctttgggatcgttctgtacag---------
| | || || |||||  | |||   || ||| | ||||| ||||||||||  |||||||||||||||||||| || || || ||||||||  |  | ||||| | |       | |        |  || || |||| | ||    || ||     |  || | |  |  |||     |    ||  | ||         
GTTCATAGTTTGTGAGTTACTTCGAGCTAATTTGTACGAGTTCCACAAATACAACAGAGAATCAGGTGGTGAGGTGTACTTTACGATGCCCCGTCTTCAGgtgtatttcacatccttgatgccgatgttgttcatagttctgctcttacaagcataatattattactttacttgtaagtgaacctagatagatgtctata