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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTAATTGTATGTGAACTTCTTAAGGCCAATCTATACGAGTTCCACAAATTTAACAGAGAATCAGGTGGTGAAGTTTATTTCACGATGCCAAGGTTGCAGgtttgtccactttatcattaccatacatcatagatatgtatatgtatccgattcctgatctctttgggaccgttctgtacag

Basic information

species Arabidopsis thaliana
transcript AT1G73450.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G73450.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G181002_T01 (Zea mays), 5'ss of exon 4
GCTAATTGTATGTGAACTTCTTAAGGCCAATCTATACGAGTTCCACAAATTTAACAGAGAATCAGGTGGTGAAGTTTATTTCACGATGCCAAGGTTGCAGgtttgtccactttatcattaccatacatcatagatatgtatatgtat-ccgattcctgatctctttgggaccgttctgtacag--------------------------------------
||| || || ||||||||||| ||||| ||||| |||||||| || ||||| |||||||||||||| ||||| ||||| ||||| ||||||||  ||||||| |  |     ||   |  |||   ||  |   |   | | ||  | ||  |  |  | | |  |   ||  || |  |||                                       
GCTGATAGTCTGTGAACTTCTGAAGGCAAATCTGTACGAGTTTCAGAAATTCAACAGAGAATCAGGGGGTGAGGTTTACTTCACAATGCCAAGACTGCAGgtattactgagctaggttatccactaatgttgacttattgtttgactaccagtaacaaaacacgattctacaatttttcacatagatttgatatttttttctttgttgtaccccttggcag

upper sequence: AT1G73450.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G015073_T01 (Zea mays), 5'ss of exon 4
GCTAATTGTATGTGAACTTCTTAAGGCCAATCTATACGAGTTCCACAAATTTAACAGAGAATCAGGTGGTGAAGTTTATTTCACGATGCCAAGGTTGCAGg--tttgt----ccactttatcattaccatacatcatagatatgtatat-gtatccgattcctgatctctttgggaccgttctgtacag------------------------------------
||| || || ||||||||||| ||||| ||||| || ||||| || ||||| |||||||||||||| ||||| ||||| ||||| ||||||||  | ||||  |||||    ||   |||| ||  ||||  ||  |   |   | | |   | || ||    ||          ||  || |  |||                                     
GCTGATAGTCTGTGAACTTCTGAAGGCAAATCTGTATGAGTTTCAGAAATTCAACAGAGAATCAGGGGGTGAGGTTTACTTCACAATGCCAAGACTCCAGgtatttgttttaccgagttatgatgtccattaatattgacttaatgtttcacaaccaataatggaatatgagactacaatttttcacattgattgaatattttttctttgttgtgcccttggcag

upper sequence: AT1G73450.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA09G29970.1 (Glycine max), 5'ss of exon 4
GCTAATTGTATGTGAACTTCTTAAGGCCAATCTATACGAGTTCCACAAATTTAACAGAGAATCAGGTGGTGAAGTTTATTTCACGATGCCAAGGTTGCAGgtttgt------ccactttatcattaccatacatc-atagat-atg-tatatgta-tccgattcctgatct-----ctttgggaccgttctgtacag------------------------------
| |||| ||||||||||| ||||| |||||  |||| ||||| |||||||||||  |||||||||| |||||||| ||||||||||||||||||||||||||||||      ||    |||  |     || ||  | | || ||| | | |||| |  |||   |  | |     ||||  |   ||    ||| |                              
GTTAATAGTATGTGAACTACTTAAAGCCAACTTATATGAGTTTCACAAATTTAATCGAGAATCAGGGGGTGAAGTGTATTTCACGATGCCAAGGTTGCAGgtttgtggtgtgccgtgatatgttctttttatatttacatatcatgctgtttgtactgtgatctttagttttcatcctttctgctagtctaatactgtcataaacacttttcaacttatgtgagcag

upper sequence: AT1G73450.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA16G34510.1 (Glycine max), 5'ss of exon 4
GCTAATTGTATGTGAACTTCTTAAGGCCAATCTATACGAGTTCCACAAATTTAACAGAGAATCAGGTGGTGAAGTTTATTTCACGATGCCAAGGTTGCAGgtttgtcc--------actttatcattaccatacatcatagatatg-tatatgta-tccgattcctgatct-----ctttgggaccgttctgtacag---------------------------------
| |||| ||||||||||| ||||| |||||| |||| ||||| |||||||||||  |||||||||| || ||||| ||||||||||||||||| ||||||||| || |          | | |  || | |||  |  |    ||| | | |||| |  |||   |  | |     ||||  |   || |  ||| |                                 
GTTAATAGTATGTGAACTACTTAAAGCCAATTTATATGAGTTTCACAAATTTAATCGAGAATCAGGGGGGGAAGTGTATTTCACGATGCCAAGATTGCAGgttagtgctgtgctgtgatatgttctttctatatttacttatcatgctgtttgtactgtgatctttagttttcatcctttctgctagtgcaatactgtcattataaacacttttcaacttatgtgtgcag

upper sequence: AT1G73450.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA05G33560.1 (Glycine max), 5'ss of exon 4
GCTAATTGTATGTGAACTTCTTAAGGCCAATCTATACGAGTTCCACAAATTTAACAGAGAATCAGGTGGTGAAGTTTATTTCACGATGCCAAGGTTGCAGgtttgtccactttatcattaccatacatcatagatatgtata-tgtatccgattcctgat-----ctctttgggaccgttctgtacag
| |||| ||||||||||| ||||| || ||  | || ||||| || |||||||| |||||||||||||||||||| || || || |||||||| ||||||||| |||   | |  ||||  | | ||| ||   ||  | || | | | | ||||    |     |||||  | |  | | ||| |||
GTTAATAGTATGTGAACTACTTAAAGCAAACTTGTATGAGTTTCATAAATTTAATAGAGAATCAGGTGGTGAAGTGTACTTTACAATGCCAAGATTGCAGgttcgtcg--tgtgccatttactt-catgatgtttaattttaatcttttctattctcagtgcaaactcttctgaattgatgtgtgcag

upper sequence: AT1G73450.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA08G06160.1 (Glycine max), 5'ss of exon 6
GCTAATTGTATGTGAACTTCTTAAGGCCAATCTATACGAGTTCCACAAATTTAACAGAGAATCAGGTGGTGAAGTTTATTTCACGATGCCAAGGTTGCAGgtttgt---ccact-ttatcattaccatacatcatagatatgtatatgtatccgattcctgatctctttgggaccgttctgtacag
| |||| |||||||| || ||||| || ||  | || ||||| || |||||||| |||||||||||||||||||| || || || |||||||| ||||||||||||      || ||  | | |  ||   | ||    || | ||| ||| |   |    | |||||  | |  | | ||| |||
GTTAATAGTATGTGAGCTACTTAAAGCAAACTTGTATGAGTTTCATAAATTTAATAGAGAATCAGGTGGTGAAGTGTACTTTACAATGCCAAGATTGCAGgtttgtggtgtgctatttacttcatgatgtttaattttcatct-tatctattctcattgcaaactcttctgaattgatgtgtgcag

upper sequence: AT1G73450.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: PP1S47_312V6.1 (Physcomitrella patens), 5'ss of exon 5
GCTAATTGTATGTGAACTTCTTAAGGCCAATCTATACGAGTTCCACAAATTTAACAGAGAATCAGGTGGTGAAGTTTATTTCACGATGCCAAGGTTGCAGgtttgtc-cactttatcattacca---tacatcatagatatg----tatatgtatccgattcctgatctctttgggaccgt-tctgtacag---------
| | || || |||||  | |||   || ||| | ||||||||||||||||  |||||||||||||||||||| || || || ||||||||  |  | ||||| | |  ||| |  |   | ||    |   |||||| | ||    || | | ||   |||  |  | |  |||  |  |   ||  | ||         
GTTCATAGTTTGTGAGTTACTTCGAGCTAATTTGTACGAGTTCCACAAATACAACAGAGAATCAGGTGGTGAGGTGTACTTTACGATGCCCCGTCTTCAGgtgtatttcacatccttgatgccgatgttgttcatagttctgctcttacaagcataatattattactttacttgtaagtgaacctagatagatgtctata