1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TAACCGAGGGAAGAACCAGAACTTTCGAGTCGAAGCATCAAGGTCTTCTGGTATTGTCTTCATGAATGCTATGGCACTTGTCGACATGTTCATGGATTGTgtaagtagctgagacatcctcatcatcatgttctgtttcacaattggttgcagcatttcttataaaaatattgtcttcttgttgcag
species | Arabidopsis thaliana |
transcript | AT1G73360.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GTATTGTCTTCATGAATGCTATGGCACTTGTCGACATGTTCATGGATTGT GTCAAGTGGACAGAACTEST: gi|124926084|gb|EL003981.1|EL003981
genomic: GTATTGTCTTCATGAATGCTATGGCACTTGTCGACATGTTCATGGATTGTgtaagtagct ... cttgttgcagGTCAAGTGGACAGAACT
EST: TATTGTTCTTCATGAATGCTATGGCACTTGTCGACATGTTCATGGATTGT GTCAAGTGGACAGAACT
genomic: TATTG-TCTTCATGAATGCTATGGCACTTGTCGACATGTTCATGGATTGTgtaagtagct ... cttgttgcagGTCAAGTGGACAGAACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAACCGAGGGAAGAACCAGAACTTTCGAGTCGAAGCATCAAGGTCTTCTGGTATTGTCTTCATGAATGCTATGGCACTTGTCGACATGTTCATGGATTGTgtaagtagctgagacatcctcatcatcatgttctgtttcacaattggttgcagcatttcttataaaaatattgtcttcttgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA