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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACAAAGACAGCAACTTTGAACAATATAAGCAAGCAGCTGAGAATTTCATCTGCAAAATCCTTCCAGATTCTCCTTCTTCCTCTACCCAATACACTCAAGgtaacctacttcacgatatagaacacaaattgctaaacaacaacctcttctaatcatatgtttaccaattacag

Basic information

species Arabidopsis thaliana
transcript AT1G71380.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G71380.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA06G48140.1 (Glycine max), 5'ss of exon 4
AACAAAGACAGCAACTTTGAACAATATAAGCAAGCAGCTGAGAATTTCATCTGCAAAATCCTTCCAGATTCTCCTTCTTCCTCTACCCAATACACTCAAGgtaac--ctacttcacga-------tatagaacacaaattg-ctaaacaacaacctcttctaatcatatgtttacca--attacag----------------------------------------------------------------------------------------------
||    || |  || ||||| ||||| ||||||| |||||||||||| || ||||| ||||||||  | ||||| |||||   ||| ||||| || ||||||||   | || |||| |       |  | ||||||  | |   || |||   | |    || | ||||       |  || |||                                                                                               
AATGGTGATAAGAATTTTGATCAATACAAGCAAGAAGCTGAGAATTTTATGTGCAAGATCCTTCCCAACTCTCCCTCTTCAAGTACACAATATACACAAGgtaaaggcaacatcactactgaattttcaaaacacagctgggtcaatcaaagtcatgcattactgatatacaagaaaacatgacaaatatttgcatccacgatcaataaatttactttgaagtgctttaaaagtattataaaaggcactaattgtatgtggtacttttatttatgggcag