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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCATTAGCTTCGTTTACAGAGGCATCAAGCGGTGTCCTTCTATGCACAGATGTCGCTGCACGTGGACTTGACATTCCAGGCATCGATTACGTTGTTCAGgttgattgattaatgcttgttatgccatctttgttgcaatggattttgacaggttattgtatgtaactggtgcag

Basic information

species Arabidopsis thaliana
transcript AT1G71370.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G71370.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA11G35640.1 (Glycine max), 5'ss of exon 6
GGCATTAGCTTCGTTTACAGAGGCATCAAGCGGTGTCCTTCTATGCACAGATGTCGCTGCACGTGGACTTGACATTCCAGGCATCGATTACGTTGTTCAGgttgattgattaatgcttgttatgccatctt-tgttg-caatggattttgacaggttattgtatgtaactggtgcag-------------------------------------------------------------
 ||| ||||||| ||||||      ||||  ||  | |||||||| |||||||| |||||||||||||||||||| || ||  | ||||   | || ||||| | |   |   |   ||   |   || |  |  || | || || | |  ||  | ||  | | |   |    |                                                               
AGCACTAGCTTCATTTACAACCCTTTCAAATGGAATTCTTCTATGTACAGATGTTGCTGCACGTGGACTTGACATACCGGGTGTAGATTGTATAGTGCAGgtagctctgtgcttctgtgaccttgtatatgatactgtctattgactattgcatttcatcttctttggttctctctctctctcccttggctgctaaaatagaccatacagtgtggttaaaatgttttttcttgtgcag