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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTGATTCTCGAGTTTGTCCATCTCACATCTTGAATTTCCAACCTGGTGAGGCTTTTGTTGTCAGAAACATAGCCAATATGGTTCCACCTTTTGACCAGgttcattaccaagccatttcactcttgttcttgtctgagatcaaataactaacaccaaagtggttttgataatttatcag

Basic information

species Arabidopsis thaliana
transcript AT1G70410.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G70410.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA02G03990.1 (Glycine max), 5'ss of exon 6
CTCTGATTCTCGAGTTTGTCCATCTCACATCTTGAATTTCCAACCTGGTGAGGCTTTTGTTGTCAGAAACATAGCCAATATGGTTCCACCTTTTGACCAGgttcatta-----ccaagccatttcactcttg---------ttcttgtctgagatcaaata-actaacaccaaagtggttt--tgataatttatcag---
||| |||||  |||||||||||||||| ||  || |||||||||| |||||||| ||| | ||| ||||||| ||||| |||||||| || | |||| ||||| | ||     || |     || |   |||         |    |||     | || |  |||||||  |||||  |||  |  |  |||||      
CTCAGATTCGAGAGTTTGTCCATCTCATATTCTGGATTTCCAACCGGGTGAGGCCTTTATGGTCCGAAACATTGCCAACATGGTTCCCCCATATGACAAGgtttactatgtttcctaaatgcttaatgtttgcagggtcaatataagtcaagctttaagtgcactaacagaaaagttatttattatttgtttatataaag

upper sequence: AT1G70410.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA01G03720.2 (Glycine max), 5'ss of exon 7
CTCTGATTCTCGAGTTTGTCCATCTCACATCTTGAATTTCCAACCTGGTGAGGCTTTTGTTGTCAGAAACATAGCCAATATGGTTCCACCTTTTGACCAGgttcattaccaagccatttcactcttgttcttgtctgagatcaaata----------actaacaccaaagtggttttgataatttatcag-------------
||| || ||  |||||||||||||||| ||  || |||||||||| ||||| || ||| | ||| ||||||| || || ||||||||||| | |||| ||||| | |  ||   |  |  |  |||  | ||    | |   | |||          | | | |  |||   ||| | ||||||| | ||             
CTCAGACTCGAGAGTTTGTCCATCTCATATTCTGGATTTCCAACCGGGTGAAGCCTTTATGGTCCGAAACATTGCTAACATGGTTCCACCATATGACAAGgtttact--catatccctaaatgcttaatgtttggagggccaatatactttggttctatttataagaaatatgttgtaataattt-ttagttttagtgcaaaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125164739|gb|EL191346.1|EL191346
EST:     AGGCTTTTGTTGTCAGAAACATAGCCAATATGGTTCCACCTTTTGACCAG                         AAGAGACACTCTGGAGTTGGCG
genomic: AGGCTTTTGTTGTCAGAAACATAGCCAATATGGTTCCACCTTTTGACCAGgttcattacc ... aatttatcagAAGAGACACTCTGGAGTTGGCG
EST: gi|124816695|gb|EH901561.1|EH901561
EST:     AGGCTTTTGTTGTCAGAAACATAGCCAATATGGTTCCACCTTTTGACCAG                         AAGAGACACTCTGGAGTTGGCGCCGCCGTTG
genomic: AGGCTTTTGTTGTCAGAAACATAGCCAATATGGTTCCACCTTTTGACCAGgttcattacc ... aatttatcagAAGAGACACTCTGGAGTTGGCGCCGCCGTTG
EST: gi|125015060|gb|EL087329.1|EL087329
EST:     CAATATGGTTCCACCTTTTGACCAG                         AAGAGACACTCTGGAGTTGGCGCCGCCGTTGAATACGCAGTT
genomic: CAATATGGTTCCACCTTTTGACCAGgttcattacc ... aatttatcagAAGAGACACTCTGGAGTTGGCGCCGCCGTTGAATACGCAGTT
EST: gi|124858357|gb|EH942794.1|EH942794
EST:     AGGCTTTTGTTGTCAGAAACATAGCCAATATGGTTCCACCTTTTGACCAG                         AAGAGACCACTCTGGAGTTGGCGCCGCCGTTGAATACGCAGTTGTA
genomic: AGGCTTTTGTTGTCAGAAACATAGCCAATATGGTTCCACCTTTTGACCAGgttcattacc ... aatttatcagAAGAGAC-ACTCTGGAGTTGGCGCCGCCGTTGAATACGCAGTTGTA