Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGGAGTATGTTGGGCAAACCGTATGGATATCACAACATGATATTCAGCTGGATCGACACTCTAGGCGATAACTACCCCCCTCCCCTTGATGCTCACTTGgtactttttaatccctgatattcttaaagatctatcatcattaagatcatcatggtaatcaacaagccacattgaactttcag

Basic information

species Arabidopsis thaliana
transcript AT1G70160.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G70160.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os08g32910.1 (Oryza sativa), 5'ss of exon 4
ACGGAGTATGTTGGGCAAACCGTATGGATATCACAACATGATATTCAGCTGGATCGACACTCTAGGCGATAACTACCCCCCTCCCCTTGATGCTCACTTGgtactttttaat---ccctgatattcttaaagatctatcatcattaagatcatcatggtaatcaacaagccacattgaactttcag
||| || ||||  |||||||| ||||||||||| ||||||||||| || ||||| || ||  |    || || || || || || || |||||| || ||||| |  |  ||    | |   | |       |  | | |   ||    |     || | |    |||   | |||    || |||
ACGAAGCATGTATGGCAAACCCTATGGATATCATAACATGATATTTAGTTGGATTGATACGATGTCAGACAATTATCCACCACCACTGGATGCTAACCTGgtattactccattgctctttgcacttcggttaacatgttagactttcagtttctttgttcagtc-caacttatattatgtttccag

upper sequence: AT1G70160.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G031824_T01 (Zea mays), 5'ss of exon 4
ACGGAGTATGTTGGGCAAACCGTATGGATATCACAACATGATATTCAGCTGGATCGACACTCTAGGCGATAACTACCCCCCTCCCCTTGATGCTCACTTGgtacttttta---atccctgatattcttaaa--gatctatcatcattaagatcatcatggtaatcaacaagccacattgaactttcag
 ||||| ||| | || || || ||||| || || ||||||||||| ||||||||||| ||  |||| ||||| || || ||||| ||||||||| || ||||| ||||||   |||  ||  |  ||| ||  ||     ||| ||| |  | ||  |            | || |      || |||
CCGGAGCATGGTTGGAAATCCTTATGGCTACCATAACATGATATTTAGCTGGATCGATACAATAGGAGATAATTATCCACCTCCTCTTGATGCTAACCTGgtaatttttatctatctttggaaagcttgaattgagtatgcatgatttatcttat-gtcaccccagtttcgtcaaacaatgtttacag

upper sequence: AT1G70160.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA18G17350.1 (Glycine max), 5'ss of exon 3
-ACGGAGTATGTTGGGCAAACCGTATGGATATCACAACATGATATTCAGCTGGATCGACACTCTAGGCGATAACTACCCCCCTCCCCTTGATGCTCACTTGgtacttt-ttaatccctgatattcttaa---agatctatcatca-ttaa--gatcatcatggtaatcaacaagccacattgaactttcag----------
  ||||| ||||  ||||| || ||||| |||||||| ||||||||||| ||||| |||||| |||  || ||||| || || || ||||||||||||||||||      |  | | || || |  | |   | || |||||| | ||||    | |  ||   | | ||| ||| | ||||   | | |           
CCCGGAGCATGTCTGGCAAGCCATATGGTTATCACAATATGATATTCAGTTGGATTGACACTGTAGCAGACAACTATCCTCCACCTCTTGATGCTCACTTggtagaaaacttgttcttgttacttattagttaaatgtatcataaattaattagtaagtatacaattgaaccagcaa-attgtgttgtgaacaacatgctg

upper sequence: AT1G70160.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA02G03160.1 (Glycine max), 5'ss of exon 4
ACGGAGTATGTTGGGCAAACCGTATGGATATCACAACATGATATTCAGCTGGATCGACACTCTAGGCGATAACTACCCCCCTCCCCTTGATGCTCACTTGgtactttttaatccctgatattcttaaagatctatcatcattaagatcatca-tggtaatcaacaagccacattgaactttcag------------------
|||||| ||||  ||||| || ||||| ||||| || ||||||||||| ||||| |||||  |||  || ||||| || || || |||||||||||||||||| |  |   |  ||  ||||  || |    || |||   | |    |     | |  |    |    |   || | | | ||                  
ACGGAGCATGTCTGGCAAGCCATATGGTTATCATAATATGATATTCAGTTGGATTGACACAGTAGCTGACAACTATCCTCCACCTCTTGATGCTCACTTGgtattaatctttttct--tatttgtataacattaacatatgtgattggactggcgtttgtatttagaatatgctgtattatgaggaggctactatgttattt

upper sequence: AT1G70160.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA01G04400.1 (Glycine max), 5'ss of exon 4
ACGGAGTATGTTGGGCAAACCGTATGGATATCACAACATGATATTCAGCTGGATCGACACTCTAGGCGATAACTACCCCCCTCCCCTTGATGCTCACTTGgtactttttaatccctgatattcttaaagatctatcatcattaa---gatcatcatggtaatcaacaagccacattgaactttcag-----------------
|||||| ||||  ||||| || ||||| ||||| || ||||||||||| ||||| |||||  |||  || ||||| || || || |||||||||||||||||| |  |   |  ||  ||||  || |    || |||   | |   || || | |    |   | ||    | ||| | |   ||                 
ACGGAGCATGTCTGGCAAGCCATATGGTTATCATAATATGATATTCAGTTGGATTGACACAGTAGCTGACAACTATCCTCCACCTCTTGATGCTCACTTGgtattaatctttttct--tatttgtataacattaacatatgtgattggaccagcgtttgtacttagaatatgc-ttgtattacgaggaggctactgtattatt

upper sequence: AT1G70160.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv01s0026g00920.t01 (Vitis vinifera), 5'ss of exon 4
ACGGAGTATGTTGGGCAAACCGTATGGATATCACAACATGATATTCAGCTGGATCGACACTCTAGGCGATAACTACCCCCCTCCCCTTGATGCTCACTTGgta--ctttttaatcc----ctgatattcttaaagatctatcatcattaagatcatcatggtaatcaacaagccacat-tgaactttcag------------
 ||||| |||   ||||| |||||||| |||||||| ||||||||||| ||||| || ||| |||  || ||||| || ||||| ||||||||||||||||||  | | || |        | || ||  |||| || | | ||  ||   || || || |   ||  ||||   | | || | | | |             
TCGGAGCATGGCAGGCAAGCCGTATGGTTATCACAATATGATATTCAGTTGGATTGATACTATAGCAGACAACTATCCACCTCCTCTTGATGCTCACTTGgtatacatcttcacaaggaattcattttggtaaaaatttgttatatttc--attataattggcttctgcaagaagcttatgcaatctaatcaaacactgatg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86063792|gb|DR359549.1|DR359549
EST:     ATGCTCACTTG                         GTTATTTCTGTCATGTCTATGTGGACTCGTGTACAACCTGCATATGCTGCT
genomic: ATGCTCACTTGgtacttttta ... gaactttcagGTTATTTCTGTCATGTCTATGTGGACTCGTGTACAACCTGCATATGCTGCT
EST: gi|124958710|gb|EL033435.1|EL033435
EST:     GGATCGACACTCTAGGCGATAACTACCCCCCTCCCCTTGATGCTCACTTG                         GTTATTTCTGTCATGTCTATGTGGAC
genomic: GGATCGACACTCTAGGCGATAACTACCCCCCTCCCCTTGATGCTCACTTGgtacttttta ... gaactttcagGTTATTTCTGTCATGTCTATGTGGAC
EST: gi|116428911|gb|EG471503.1|EG471503
EST:     GGATCGACACTCTAGGCGATAACTACCCCCCTCCCCTTGATGCTCACTTG                         GTTATTTCTGTCATGTCTATGTGGACTCGTGTACAACCTGCATATGCTGCT
genomic: GGATCGACACTCTAGGCGATAACTACCCCCCTCCCCTTGATGCTCACTTGgtacttttta ... gaactttcagGTTATTTCTGTCATGTCTATGTGGACTCGTGTACAACCTGCATATGCTGCT
EST: gi|124814213|gb|EH899079.1|EH899079
EST:     TAGGCGATAACTACCCCCCTCCCCTTGATGCTCTACTTG                         GTTATTTCTGTCATGTCTATGTGGACTCGTGTACAACCTGCATATGCTGC
genomic: TAGGCGATAACTACCCCCCTCCCCTTGATGCTC-ACTTGgtacttttta ... gaactttcagGTTATTTCTGTCATGTCTATGTGGACTCGTGTACAACCTGCATATGCTGC
EST: gi|86063791|gb|DR359548.1|DR359548
EST:     ATGCTCACTTG                         GTTATTTCTGTCATGTCTATGTGGACTCGTGTACAACCTGCATATGCTGCT
genomic: ATGCTCACTTGgtacttttta ... gaactttcagGTTATTTCTGTCATGTCTATGTGGACTCGTGTACAACCTGCATATGCTGCT
EST: gi|163998680|gb|ES149504.1|ES149504
EST:     GGATCGACACTCTAGGCGATAACTACCCACCTCCCCTTGATGCTCACTTG                         GTTATTTCTGTCATGTCTATGTGGACTCG
genomic: GGATCGACACTCTAGGCGATAACTACCCCCCTCCCCTTGATGCTCACTTGgtacttttta ... gaactttcagGTTATTTCTGTCATGTCTATGTGGACTCG
EST: gi|47831564|gb|CK121248.1|CK121248
EST:     GGATCGACACTCTAGGCGATAACTACCCCCCTCCCCTTGATGCTCACTTG                         GTTATTTCTGTCATGTCTATGTGGACTCGTGTACAACCTGCATATGCTGCT
genomic: GGATCGACACTCTAGGCGATAACTACCCCCCTCCCCTTGATGCTCACTTGgtacttttta ... gaactttcagGTTATTTCTGTCATGTCTATGTGGACTCGTGTACAACCTGCATATGCTGCT