Sequence
atgc intronic sequence ATGC exonic sequenceGTCATCCGCGTATCATTCACAGGGACATCAAGTCGTCTAACATTCTTTTAGAGGACAACTTTGATGCTCGGgtacaacattagtcttgctattttagatttttttcaaggtttcagttaaatggtgacttgaacagtatttgatctctcattttttttgtag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G68690.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G68690.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA01G23180.1 (Glycine max), 5'ss of exon 4
GTCATCCGCGTATCATTCACAGGGACATCAAGTCGTCTAACATTCTTTTAGAGGACAACTTTGATGCTCGGgtac--aacattagtcttgctattttagatttttttcaaggtttcagttaaatggtgacttgaacagtatttgatctctcattttttttgtag---
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GCAACCCTAGGATCATTCACAGGGATATCAAGTCATCAAACATTCTTTTAGATTTCAATTATGAAGCCAAGgtatctgtcattctacgtacttatttaaagttt----gatagtttgttctatttttatccatcctaatcttagtactccaatttttaatgttatag
upper sequence: AT1G68690.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA02G14310.1 (Glycine max), 5'ss of exon 4
GTCATCCGCGTATCATTCACAGGGACATCAAGTCGTCTAACATTCTTTTAGAGGACAACTTTGATGCTCGGgtac--aacattagtcttgctattttagatttttttcaaggtttcagttaaatggtgacttgaacagtatttgatctctcattttttttgtag
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GCAACCCTAGGATCATTCACAGGGATATCAAGTCATCAAACATTCTCTTAGATTTCAATTTTGAAGCCAAGgtatctgtcattctacgtacttattcaaagtttgatagtttgttctattta-tatccatccaaatcttagtactccaagttttaatgttatag
upper sequence: AT1G68690.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: EFJ19888 (Selaginella moellendorffii), 5'ss of exon 3
GTCATCCGCGTATCATTCACAGGGACATCAAGTCGTCTAACATTCTTTTAGAGGACAACTTTGATGCTCGGgtacaacattagtcttgctattttagatttttttcaaggtttcagttaaatggtgacttgaacagtatttgatctctcattttttttgtag
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GCCATCCTCGAATCATTCATCGGGACATAAAGTCGTCTAACATTCTTTTGGATAACAATTTTGACGCTCAGgtttgttgtta-------catatttgctcactttc----tttcaattgtaacg---cttgtccattacag---------------------
upper sequence: AT1G68690.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: EFJ07415 (Selaginella moellendorffii), 5'ss of exon 3
GTCATCCGCGTATCATTCACAGGGACATCAAGTCGTCTAACATTCTTTTAGAGGACAACTTTGATGCTCGGgtacaacattagtcttgctattttagattttttt-caaggtttcagttaaatggtgacttgaacagtatttgatctctcattttttttgtag
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GCCATCCTCGAATCATTCATCGGGACATAAAGTCGTCTAACATTCTTTTGGATAATAATTTTGACGCTCAGgt------------ttgttgttacatatttgctcacttgctttcaattgtaacg---cttgtccattacag---------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124787655|gb|EH877334.1|EH877334EST: GGGACATCAAGTCGTCTAACATTCTTTTAGAGGACAACTTTGATGCTCGG GTTTCTGACTTTGGCCTTGCAAGATTAGCT
genomic: GGGACATCAAGTCGTCTAACATTCTTTTAGAGGACAACTTTGATGCTCGGgtacaacatt ... ttttttgtagGTTTCTGACTTTGGCCTTGCAAGATTAGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCATCCGCGTATCATTCACAGGGACATCAAGTCGTCTAACATTCTTTTAGAGGACAACTTTGATGCTCGGgtacaacattagtcttgctattttagatttttttcaaggtttcagttaaatggtgacttgaacagtatttgatctctcattttttttgtag
- - - - - - - - - - - - - - - - - - - - - - - - AGAGGA