Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAAGCTAAGAACAGGCACTCTAATGGTCAAGGACGTTGGCCAGCCAAGTCTGCTCAGTTTGTTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAGgtgagacgagcattcatttaattaaggaaactttttcttgtttctctctgtacccttttgctaataagcatattttgactttgaatgttcag

Basic information

species Arabidopsis thaliana
transcript AT1G67430.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G67430.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G126594_T02 (Zea mays), 5'ss of exon 4
TCAAGCTAAGAACAGGCACTCTAATGGTCAAGGACGTTGGCCAGCCAAGTCTGCTCAGTTTGTTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAGgtgagacgagcattcatttaattaaggaaactttttcttgtttctctctgtacccttttgctaataagcatattttgactttgaatgttcag
||| ||||||    | ||||| |||||||| ||||| ||||| | |||||||||| | ||  |||| ||  | |||||||| || |||||||||||||||||   || |   | | ||    |     | || | | |   |      ||||      |||||||     ||| |  | ||      | |||
TCAGGCTAAGTCTCGCCACTCAAATGGTCAGGGACGCTGGCCTGTCAAGTCTGCTAAATTCATTCTAGACCTTCTCAAGAATGCAGAGAGCAATGCTGAGgtct-acaattctactttgcgctgtcagagctatctttgcatctataatgta------tgctaat-----tatgtcaatttctctgctgcag

upper sequence: AT1G67430.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G119169_T04 (Zea mays), 5'ss of exon 3
TCAAGCTAAGAACAGGCACTCTAATGGTCAAGGACGTTGGCCAGCCAAGTCTGCTCAGTTTGTTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAGgtgagacgagcattcatttaattaaggaaactttttcttgtttctctctgtacccttttgctaat-aagcatattttgactttgaatgttcag
||| ||||||    | ||||| ||||| || ||||| ||||| | ||| ||||||   ||  |||| ||  | |||||||| ||||||||||||||||||||   || |  || |  |   |     | || | |  ||| ||||    |||   || ||||||| | |    |||      || |       
TCAGGCTAAGTCTCGTCACTCAAATGGGCAGGGACGCTGGCCTGTCAAATCTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgttt-acaattatactgtccct--gtcagacctatctttgcttct----gtaatgttatgctaattatgtgagtttctctgctgcag------

upper sequence: AT1G67430.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G119169_T03 (Zea mays), 5'ss of exon 5
TCAAGCTAAGAACAGGCACTCTAATGGTCAAGGACGTTGGCCAGCCAAGTCTGCTCAGTTTGTTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAGgtgagacgagcattcatttaattaaggaaactttttcttgtttctctctgtacccttttgctaat-aagcatattttgactttgaatgttcag
                               ||||| ||||| | ||| ||||||   ||  |||| ||  | |||||||| ||||||||||||||||||||   || |  || |  |   |     | || | |  ||| ||||    |||   || ||||||| | |    |||      || |       
-------------------------------GGACGCTGGCCTGTCAAATCTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgttt-acaattatactgtccct--gtcagacctatctttgcttct----gtaatgttatgctaattatgtgagtttctctgctgcag------

upper sequence: AT1G67430.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA08G10910.2 (Glycine max), 5'ss of exon 4
TCAAGCTAAGAACAGGCACTCTAATGGTCAAGGACGTTGGCCAGCCAAGTCTGCTCAGTTTGTTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAGgtgagacga-gcattcatttaattaaggaaactttttcttgtttctctctgtacccttttgctaataagcatattttga--ctttgaatgttcag
 || |||||||| || ||||||||||| |||||||| ||||| | |||||| ||  | ||  |||||||||||||||| || ||||||||||||||||| ||  | | |   || | |||  ||       | | |   | ||||   |   | |  ||| | ||| |   ||  |  |   |||   | |||||
CCAGGCTAAGAATAGACACTCTAATGGCCAAGGACGGTGGCCTGTCAAGTCAGCAAAATTCATTCTTGATTTGCTCAAAAATGCTGAGAGCAATGCTGAAgtatgtctatatatacttttttttgcttttccatatggctatttcatgcc--aactgtttccaaattaatttaactgaaatttttttcttttcag

upper sequence: AT1G67430.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA11G37160.1 (Glycine max), 5'ss of exon 4
TCAAGCTAAGAACAGGCACTCTAATGGTCAAGGACGTTGGCCAGCCAAGTCTGCTCAGTTTGTTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAGgtgagacgagcattcatttaattaaggaaactttttcttgtttctctctgtacccttttgctaataagcata--ttttgactttgaatgttcag
 || ||||||| ||| ||||| |||||||||||||| ||||| | ||| || ||| ||||  | || |||||||| |||||||||||||| |||||||||||  |       |  ||  | || |    | ||||  |    |   | |    |   || ||||  |  | |  |||||| |         |||
CCAGGCTAAGAGCAGACACTCCAATGGTCAAGGACGCTGGCCCGTCAAATCAGCTAAGTTCATCCTAGATTTGCTGAAGAACGCTGAGAGTAATGCTGAGgtatgtgtcctgtatatgcatttgatttgatttttcatatgattattttaagtcaactttctaagtaataaaacttttgattgctttaacacag

upper sequence: AT1G67430.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA18G01110.1 (Glycine max), 5'ss of exon 4
TCAAGCTAAGAACAGGCACTCTAATGGTCAAGGACGTTGGCCAGCCAAGTCTGCTCAGTTTGTTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAGgtgagacgagcat--tcatttaattaaggaaactttttcttgtttctctctgtacccttttgctaataagcata-ttttgactttgaatgttcag--
 || ||||||||||| ||||| ||||| |||||||| ||||| | ||| || ||| ||||  |||| |||||||| ||||| |||||||| |||||||| ||  | |  | ||   ||||| |||     |  |||    || || | |     |   |||   | | |  ||| |||||  ||||  |   ||   
CCAGGCTAAGAACAGACACTCCAATGGGCAAGGACGCTGGCCCGTCAAATCAGCTAAGTTCATTCTAGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAgtatgtcctgtataagcatttgatttg---atttttcatatgattattttaagtcaactttcaaagtcattatacttttggttttgctttgccacag

upper sequence: AT1G67430.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA05G27940.1 (Glycine max), 5'ss of exon 4
TCAAGCTAAGAACAGGCACTCTAATGGTCAAGGACGTTGGCCAGCCAAGTCTGCTCAGTTTGTTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAGgtgagacgagcattcatttaattaaggaaactttttcttgtttctctctgtacccttttgctaataagcatattttgactttgaatgttcag
|||||| ||||| || ||||||||||| |||||| | ||||| | |||||| ||  | ||  | |||||||||||||| || ||||||||||||||||| ||   |     | || |||  |        ||||| | | |  || | | ||   |||    | |||  |  |    | | |   | |||||
TCAAGCAAAGAATAGACACTCTAATGGCCAAGGAAGGTGGCCTGTCAAGTCAGCAAAATTCATCCTTGATTTGCTCAAAAATGCTGAGAGCAATGCTGAAgtattata--tactctttttttc-------cttttccatatggctattt-tatgatttccaaactaattaactgaaaattgtttcttttcag

upper sequence: AT1G67430.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv01s0010g03380.t01 (Vitis vinifera), 5'ss of exon 3
TCAAGCTAAGAACAGGCACTCTAATGGTCAAGGACGTTGGCCAGCCAAGTCTGCTCAGTTTGTTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAGgtgagacgagcattcatttaattaaggaaactttttcttgtttctctctgtacccttttgctaataagcatattttgactttgaatgttcag
||| || ||||||||||| || ||||| |||||||| ||||| | ||| |||||| | ||  | || |||||||| ||||| |||||||| |||||||| ||       | ||||| ||          |  | ||||    | | ||| ||   |    ||||  |  | || |  | | | |  |     
TCAGGCAAAGAACAGGCATTCGAATGGACAAGGACGCTGGCCTGTCAAATCTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGATgta-----tgtattcaattgcccttcaccatgtattctctgctttgtctataat-tccaactaactaataaatgtcaattcttacag-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124734229|gb|EH825631.1|EH825631
EST:     CTGCTCAGTTTGTTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAG                         GTGAAAGGTTTGGATGTTGA
genomic: CTGCTCAGTTTGTTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAGgtgagacgag ... gaatgttcagGTGAAAGGTTTGGATGTTGA
EST: gi|163974089|gb|ES158181.1|ES158181
EST:     AACGCTGAGAGCAATGCTGAG                         GTG-AAGGTTTGGATGTTGATGCCCTCTTCATATCACACATCCAAGTGAAC
genomic: AACGCTGAGAGCAATGCTGAGgtgagacgag ... gaatgttcagGTGAAAGGTTTGGATGTTGATGCCCTCTTCATATCACACATCCAAGTGAAC
EST: gi|124966508|gb|EL040607.1|EL040607
EST:     AAGAACGCTGAGAGCAATGCTGAG                         GTGAAAGGTTTGGATGTTGATGCCCTCTTCATATCACACATCCAAGTGAAC
genomic: AAGAACGCTGAGAGCAATGCTGAGgtgagacgag ... gaatgttcagGTGAAAGGTTTGGATGTTGATGCCCTCTTCATATCACACATCCAAGTGAAC
EST: gi|124781117|gb|EH871060.1|EH871060
EST:     TTTGTTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAG                         GTGAAAGGTTTGGATGTTGATGCCCTCTTCATATCACACATCCAAGTGAA
genomic: TTTGTTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAGgtgagacgag ... gaatgttcagGTGAAAGGTTTGGATGTTGATGCCCTCTTCATATCACACATCCAAGTGAA
EST: gi|164105599|gb|ES113384.1|ES113384
EST:     TTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAG                         GTGAAAGGTTTGGATGTTGATGCCCTCTTCATATCACACATCCAAGTGAAC
genomic: TTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAGgtgagacgag ... gaatgttcagGTGAAAGGTTTGGATGTTGATGCCCTCTTCATATCACACATCCAAGTGAAC
EST: gi|124723158|gb|EH814560.1|EH814560
EST:     CTGCTCAGTTTGTTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAG                         GTGAAAGGTTTGG
genomic: CTGCTCAGTTTGTTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAGgtgagacgag ... gaatgttcagGTGAAAGGTTTGG
EST: gi|164202492|gb|EL968989.1|EL968989
EST:     CTGCTCAGTTTGTTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAG                         GTGAAAGGTTTGGATGTTGATGCCCTCTTC
genomic: CTGCTCAGTTTGTTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAGgtgagacgag ... gaatgttcagGTGAAAGGTTTGGATGTTGATGCCCTCTTC
EST: gi|164081020|gb|ES125047.1|ES125047
EST:     TTGTTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAG                         GTGAAAGGTTTGGATGTTGATGCCCTCTTCATATCACACATCCAAGTGAAC
genomic: TTGTTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAGgtgagacgag ... gaatgttcagGTGAAAGGTTTGGATGTTGATGCCCTCTTCATATCACACATCCAAGTGAAC
EST: gi|164031882|gb|ES124029.1|ES124029
EST:     TTCTTGATTTGCTCAAGAACGCTGAGAGCAATAGCTGAG                         GTGAAAGGTTTGGATGTTGATGCCCTCTTCATATCACACATCCAAGTGAA
genomic: TTCTTGATTTGCTCAAGAACGCTGAGAGCAAT-GCTGAGgtgagacgag ... gaatgttcagGTGAAAGGTTTGGATGTTGATGCCCTCTTCATATCACACATCCAAGTGAA
EST: gi|164095287|gb|ES190689.1|ES190689
EST:     AACGCTGAGAGCAATGCTGAG                         GTGAAAGGTTTGGATGTTGATGCCCTCTTCATATCACACATCCAAGTGAAC
genomic: AACGCTGAGAGCAATGCTGAGgtgagacgag ... gaatgttcagGTGAAAGGTTTGGATGTTGATGCCCTCTTCATATCACACATCCAAGTGAAC
EST: gi|116454165|gb|EG496757.1|EG496757
EST:     CTGCTCAGTTTGTTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAG                         GTGAAAGGTTTGGATGTTGATGCCCTCTTCATATCACACATCCAAGTGAAC
genomic: CTGCTCAGTTTGTTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAGgtgagacgag ... gaatgttcagGTGAAAGGTTTGGATGTTGATGCCCTCTTCATATCACACATCCAAGTGAAC
EST: gi|152035881|gb|BP863620.2|BP863620
EST:     TGCCTCAGTTTGTTCTTGATTTGCTCAAGAACGCTGAGAGAAATGCTGAG                         GTGAAAGGTTTGGATGTTGATGCCCTCT
genomic: TGC-TCAGTTTGTTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAGgtgagacgag ... gaatgttcagGTGAAAGGTTTGGATGTTGATGCCCTCT
EST: gi|164077527|gb|ES124561.1|ES124561
EST:     GCTGAGAGCAATGCTGAG                         GTGAAAGGTTTGGATGTTGATGCCCTCTTCATATCACACATCCAAGTGAAC
genomic: GCTGAGAGCAATGCTGAGgtgagacgag ... gaatgttcagGTGAAAGGTTTGGATGTTGATGCCCTCTTCATATCACACATCCAAGTGAAC
EST: gi|164220631|gb|ES147371.1|ES147371
EST:     TTGTTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAG                         GTGAAAGGTTTGGATGTTGATGCCCTNTTCATATCACACATCCAAGTGAAC
genomic: TTGTTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAGgtgagacgag ... gaatgttcagGTGAAAGGTTTGGATGTTGATGCCCTCTTCATATCACACATCCAAGTGAAC
EST: gi|164184894|gb|ES084598.1|ES084598
EST:     CTGCTCAGTTTGTTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAG                         GTGAAAGGTTTGGATGTTGATGCCCT
genomic: CTGCTCAGTTTGTTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAGgtgagacgag ... gaatgttcagGTGAAAGGTTTGGATGTTGATGCCCT
EST: gi|125012234|gb|EL084503.1|EL084503
EST:     GCTCAAGAACGCTGAGAGCAATGCTGAG                         GTGAAAGGTTTGGATGTTGATGCCCTCTTCATATCACACAT
genomic: GCTCAAGAACGCTGAGAGCAATGCTGAGgtgagacgag ... gaatgttcagGTGAAAGGTTTGGATGTTGATGCCCTCTTCATATCACACAT
EST: gi|116451520|gb|EG494112.1|EG494112
EST:     CTGCTCAGTTTGTTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAG                         GTGAAAGGTTTGGATGTTGATGCCCTCTTCATATCACACATCCAAGTGAAC
genomic: CTGCTCAGTTTGTTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAGgtgagacgag ... gaatgttcagGTGAAAGGTTTGGATGTTGATGCCCTCTTCATATCACACATCCAAGTGAAC
EST: gi|125205232|gb|EL220186.1|EL220186
EST:     CTGCTCAGTTTGTTCTTGATTTGCTCAAGAGCGCTGAGAGCAATGCTGAG                         GTGAAAGGTTTGGATGTTGATG
genomic: CTGCTCAGTTTGTTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAGgtgagacgag ... gaatgttcagGTGAAAGGTTTGGATGTTGATG
EST: gi|164030735|gb|ES063620.1|ES063620
EST:     CTTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAG                         GTGAAAGGTTTGGATGTTGATGCCCTCTTCATATCACACATCCAAGTGAAC
genomic: CTTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAGgtgagacgag ... gaatgttcagGTGAAAGGTTTGGATGTTGATGCCCTCTTCATATCACACATCCAAGTGAAC
EST: gi|164149745|gb|ES020815.1|ES020815
EST:     GCTCAAGAACGCTGAGAGCAATGCTGAG                         GTGAAAGGTTTGGATGTTGATGCCCTCTTCATATCACACATCCAAGTGAAC
genomic: GCTCAAGAACGCTGAGAGCAATGCTGAGgtgagacgag ... gaatgttcagGTGAAAGGTTTGGATGTTGATGCCCTCTTCATATCACACATCCAAGTGAAC
EST: gi|125124008|gb|EL170205.1|EL170205
EST:     CTGCTCAGTTTGTTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAG                         GTGAAAGGTTTGGATGTTGATGCCCTCTTCATATCA
genomic: CTGCTCAGTTTGTTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAGgtgagacgag ... gaatgttcagGTGAAAGGTTTGGATGTTGATGCCCTCTTCATATCA
EST: gi|164129784|gb|ES167527.1|ES167527
EST:     TGAGAGCAATGCTGAG                         GTGAAAGGTTTGGATGTTGATGCCCTCTTCATATCACACATCCAA-TGAAC
genomic: TGAGAGCAATGCTGAGgtgagacgag ... gaatgttcagGTGAAAGGTTTGGATGTTGATGCCCTCTTCATATCACACATCCAAGTGAAC
EST: gi|164130907|gb|EL984376.1|EL984376
EST:     CTGCTCAGTTTGTTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAG                         GTGAAAGGTTTGGATGTTG
genomic: CTGCTCAGTTTGTTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAGgtgagacgag ... gaatgttcagGTGAAAGGTTTGGATGTTG
EST: gi|116454164|gb|EG496756.1|EG496756
EST:     CTGCTCAGTTTGTTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAG                         GTGAAAGGTTTGGATGTTGATGCCCTCTTCATATCACACATCCAAGTGAAC
genomic: CTGCTCAGTTTGTTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAGgtgagacgag ... gaatgttcagGTGAAAGGTTTGGATGTTGATGCCCTCTTCATATCACACATCCAAGTGAAC
EST: gi|164151153|gb|ES080525.1|ES080525
EST:     TTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAG                         GTGAAAGGTTTGGATGTTGATGCCCTCTTCATATCACACATCCAAGTGAAC
genomic: TTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAGgtgagacgag ... gaatgttcagGTGAAAGGTTTGGATGTTGATGCCCTCTTCATATCACACATCCAAGTGAAC
EST: gi|164171728|gb|ES204699.1|ES204699
EST:     GTTTGTTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAG                         GTGAAAGGTTTGGATGTTGATGCCCTCTTCATATCACACATCCAAGTGAA
genomic: GTTTGTTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAGgtgagacgag ... gaatgttcagGTGAAAGGTTTGGATGTTGATGCCCTCTTCATATCACACATCCAAGTGAA
EST: gi|116454163|gb|EG496755.1|EG496755
EST:     CTGCTCAGTTTGTTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAG                         GTGAAAGGTTTGGATGTTGATGCCCTCTTCATATCACACATCCAAGTGAAC
genomic: CTGCTCAGTTTGTTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAGgtgagacgag ... gaatgttcagGTGAAAGGTTTGGATGTTGATGCCCTCTTCATATCACACATCCAAGTGAAC
EST: gi|116451521|gb|EG494113.1|EG494113
EST:     CTGCTCAGTTTGTTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAG                         GTGAAAGGTTTGGATGTTGATGCCCTCTTCATATCACACATCCAAGTGAAC
genomic: CTGCTCAGTTTGTTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAGgtgagacgag ... gaatgttcagGTGAAAGGTTTGGATGTTGATGCCCTCTTCATATCACACATCCAAGTGAAC
EST: gi|164080934|gb|ES117009.1|ES117009
EST:     TTTGCTCAAGAACGCTGAGAGCAATGCTGAG                         GTGAAAGGTTTGGATGTTGATGCCCTCTTCATATCACACATCCAAGTGAAC
genomic: TTTGCTCAAGAACGCTGAGAGCAATGCTGAGgtgagacgag ... gaatgttcagGTGAAAGGTTTGGATGTTGATGCCCTCTTCATATCACACATCCAAGTGAAC
EST: gi|124730461|gb|EH821863.1|EH821863
EST:     CTGCTCAGTTTGTTCTTGATTTGCTCAAGAACGCCGAGAGCAATGCTGAG                         GTGAAAGGTTTGGATGTT
genomic: CTGCTCAGTTTGTTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAGgtgagacgag ... gaatgttcagGTGAAAGGTTTGGATGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCAAGCTAAGAACAGGCACTCTAATGGTCAAGGACGTTGGCCAGCCAAGTCTGCTCAGTTTGTTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTGAGgtgagacgagcattcatttaattaaggaaactttttcttgtttctctctgtacccttttgctaataagcatattttgactttgaatgttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG