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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGTTCTTAAAGGTTTTGACCAGGCTACAAATATAATCCTTGATGAATCTCATGAACGTGTGTTTTCCACAAAGgttagcttctgattcctgttttaaagtattttcatctgaacttttcgatgttactaaattgaatgggtgcaaatacatttttctgcaagtaaattggcca...

Basic information

species Arabidopsis thaliana
transcript AT1G65700.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G65700.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA08G18410.1 (Glycine max), 5'ss of exon 4
GGAGTTCTTAAAGGTTTTGACCAGGCTACAAATATAATCCTTGATGAATCTCATGAACGTGTGTTTTCCACAAAGgttagcttctgat-tcctgttttaaagtattttcatctgaacttttcgatgttactaaattgaatgggtgcaa-atacatttttctgcaagtaaattggcca
||||| || ||||||||||||||||| |||||||| || |||||||| || |||||||| || | ||| ||||||||  | |   | | | | |||  | |  | || | ||  |  ||   ||   |  ||| || ||||     || ||  || |||      |  | |||||| 
GGAGTCCTGAAAGGTTTTGACCAGGCAACAAATATTATTCTTGATGAGTCCCATGAACGGGTTTATTCTACAAAGgtatgatgaagttatgcagttgcagaaaaattccttcaaagattcatgac--tcataacttaaatgaacttaatatttatatttagctttgagacttggccc

upper sequence: AT1G65700.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA15G40590.1 (Glycine max), 5'ss of exon 4
GGAGTTCTTAAAGGTTTTGACCAGGCTACAAATATAATCCTTGATGAATCTCATGAACGTGTGTTTTCCACAAAGgttagcttctgat-tcctgttttaaagtattttcatctgaacttttcgatgttactaaattgaatgggt---gcaaatacatttttctgcaagtaaattggcca
||||| || ||||||||||| ||||| ||||||||||| |||||||| || |||||||| || | ||| || |||||  | |   | | | |  ||  | |  | || | ||  |  ||   || |  | ||| || ||||      | |  || ||||  ||   ||     |     
GGAGTCCTGAAAGGTTTTGATCAGGCAACAAATATAATTCTTGATGAGTCCCATGAACGAGTTTATTCTACCAAGgtatgatgaagttatgcaattgcagaaaaattccttcaaagattaatga-gcca-taacttcaatgaacttagtatttatatttagctttgagacctctaaa--

upper sequence: AT1G65700.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv16s0039g00240.t01 (Vitis vinifera), 5'ss of exon 4
GGAGTTCTTAAAGGTTTTGACCAGGCTACAAATATAATCCTTGATGAATCTCATGAACGTGTGTTTTCCACAAAGgttagcttc-------tgattcctgttttaaagtattttcatctgaacttttcgatgt-tactaaattgaatgggtgcaaatacatttttctgcaagtaaattggcca
|||||||| || || |||||||||||||| ||||| || ||||||||||||||||| ||||| |  |||||||||||| |  ||       |  |||   ||||| || | || | |       ||| ||| | ||  |||| |           | |  ||      |||  ||        
GGAGTTCTAAAGGGCTTTGACCAGGCTACCAATATCATTCTTGATGAATCTCATGAGCGTGTTTACTCCACAAAGgtttgtgtccttaacatacttctaattttatagaaattcccttcctttgttttgatctgtagaaaatggggaaatcatgtaaagcttcactaacaaaaaa--------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125015910|gb|EL088179.1|EL088179
EST:     CTACAAATATAATCCTTGATGAATCTCATGAACGTGTGTTT-CCACAAAG                         GAAGGAGTACAACAACATGTGTT
genomic: CTACAAATATAATCCTTGATGAATCTCATGAACGTGTGTTTTCCACAAAGgttagcttct ... atctttgcagGAAGGAGTACAACAACATGTGTT
EST: gi|125072200|gb|EL136976.1|EL136976
EST:     CAAATATAATCCTTGATGAATCTCATGAACGTGTGTTTTCCACAAAG                         GAAGGAGTACAACAACATGTGTTGGGTTTGTACATCATCAGAGGGGACAAC
genomic: CAAATATAATCCTTGATGAATCTCATGAACGTGTGTTTTCCACAAAGgttagcttct ... atctttgcagGAAGGAGTACAACAACATGTGTTGGGTTTGTACATCATCAGAGGGGACAAC
EST: gi|152038480|gb|AV824046.2|AV824046
EST:     CTACAAATATAATCCTTGATGAATCTCATGAACGTGTGTTTTCCACAAAG                         GAAGGAGTACAACAACATGTGTTGGGTTTGTACATCATCAGAGGGGACAAC
genomic: CTACAAATATAATCCTTGATGAATCTCATGAACGTGTGTTTTCCACAAAGgttagcttct ... atctttgcagGAAGGAGTACAACAACATGTGTTGGGTTTGTACATCATCAGAGGGGACAAC
EST: gi|164200742|gb|ES085655.1|ES085655
EST:     GATGAATCTCATGAACGTGTGTTTTCCACAAAG                         GAAGGAGTACAACAACATGTGTTGGGTTTGTACATCATCAGAGGGGACAAC
genomic: GATGAATCTCATGAACGTGTGTTTTCCACAAAGgttagcttct ... atctttgcagGAAGGAGTACAACAACATGTGTTGGGTTTGTACATCATCAGAGGGGACAAC
EST: gi|125281075|gb|EL295160.1|EL295160
EST:     CTACAAATATAATCCTTGATGAATCTCATGAACGTGTGTTTTCCACAAAG                         GAAGGAGTACAACAACATGTGTTGGGTTTGTACATCATCAG
genomic: CTACAAATATAATCCTTGATGAATCTCATGAACGTGTGTTTTCCACAAAGgttagcttct ... atctttgcagGAAGGAGTACAACAACATGTGTTGGGTTTGTACATCATCAG