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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTATTTTCTTCGTCCGCTACTGTGTATGGCTGGCCAAAGGAGGTTCCTTGTACAGAAGAGTCTCCCCTGTCTGGAATGAGTCCTTATGGACGGACAAAGgtactcagtcgttttcgatagcaaagtggaagcttttattgtagatttgattggtatttatactggaatgtttctcatttcgtag

Basic information

species Arabidopsis thaliana
transcript AT1G64440.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G64440.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA01G43540.2 (Glycine max), 5'ss of exon 4
TGTATTTTCTTCGTCCGCTACTGTGTATGGCTGGCCAAAGGAGGTTCCTTGTACAGAAGAGTCTCCCCTGTCTGGAATGAGTCCTTATGGACGGACAAAGgtac--tcagtcgttttcgatagcaaagtggaa---gcttttattgtagatttgattggtatttatactggaatgtttctcatttcgtag
 || ||||| || || || ||||| ||||| ||||||||||||||||| || ||||||||||  || ||||| | |||||  || |||||||| || ||||||     ||  || || | | | || ||| ||   | ||||  | |  |||   |  ||       |||  | | |  |  |||   ||
CGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTTCCATGCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTAAGgtatgactaggagtgtttgttgg-aaggtgaaacttggttttgatttgaattctgtgtgttcgccatctgatacgatgtttgtttttcag

upper sequence: AT1G64440.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA05G36850.1 (Glycine max), 5'ss of exon 4
TGTATTTTCTTCGTCCGCTACTGTGTATGGCTGGCCAAAGGAGGTTCCTTGTACAGAAGAGTCTCCCCTGTCTGGAATGAGTCCTTATGGACGGACAAAGgtactcagtcgttttcgatagcaaagtggaagcttttattgtagatttg-attggtatttatactggaatgtttctcatttcgtag
||| || || || || || ||||| |||||||||||||||||||| || ||||| |||||||  ||  |||| | ||  |  || |||||||| || |||||  |   |    ||  ||  || | |   |   ||| ||| | | |   | || ||| || |   || | |||||| ||||    
TGTGTTCTCATCTTCAGCAACTGTATATGGCTGGCCAAAGGAGGTCCCATGTACCGAAGAGTTCCCTTTGTCAGCAACAAACCCATATGGACGAACCAAGgttttgcat----tttaatttcataattataa--tttgttgaatactaacaatgatatcta-atgagagtttttctcttttcag--

upper sequence: AT1G64440.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv02s0025g01580.t01 (Vitis vinifera), 5'ss of exon 4
TGTATTTTCTTCGTCCGCTACTGTGTATGGCTGGCCAAAGGAGGTTCCTTGTACAGAAGAGTCTCCCCTGTCTGGAATGAGTCCTTATGGACGGACAAAGgtactc--------------------agtcgttttcg-------atagcaaagtggaagcttttat-tgtagatttgattggtatttatactggaatgtttctcatttcgtag-------------------------------------
||| ||||| || || |||||||| ||||| ||||||||||||||||| |||||||||||||  || || | ||     | ||| |||||||| || ||||||  |                    | | ||||  |       |||  ||||    || ||  |  |  ||   || || | |  | |||     |||||||  |||  |||                                     
TGTTTTTTCATCATCAGCTACTGTTTATGGTTGGCCAAAGGAGGTTCCATGTACAGAAGAGTTCCCGCTATGTGCTGCAAATCCATATGGACGAACCAAGgtatgctttgggcaatgaacagaggcaatagtttcggttcaggcatactaaagaaacagattgcacataaaggaatggttagaacctttac-aatctgtttcttctttattagcatctgttctaacaactgatgaggttgatcctttcag

upper sequence: AT1G64440.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv02s0025g01560.t01 (Vitis vinifera), 5'ss of exon 4
TGTATTTTCTTCGTCCGCTACTGTGTATGGCTGGCCAAAGGAGGTTCCTTGTACAGAAGAGTCTCCCCTGTCTGGAATGAGTCCTTATGGACGGACAAAGgtactcagtcgttttcgatagcaaagtggaagcttttattgtag-atttgattggtatttatactggaatgtttctcatttcgtag---------------
||| ||||| || || |||||||| ||||| ||||||||||||||||| |||||||||||||  || || | || ||  | ||| |||||||| || ||||||     | |     || |   | |    |  || | ||   | ||   |  |  |   ||  |||| ||    | |     |                 
TGTTTTTTCATCATCAGCTACTGTTTATGGTTGGCCAAAGGAGGTTCCATGTACAGAAGAGTTCCCACTATGTGCAACAAATCCATATGGACGAACTAAGgtatgttttgggaaatga-acagaggcaatattttctgttcaggcatactaaagaaacagatgttggattgcacataaaggaatgactagaacctttaata