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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTTTGATTTCGCCGACAAATACAGAGGAAAATACGACAGCAGTATCACTGTTGCCCAGAAATACTACCGATCCGTCAGCGGTTACAATgtaagatcccacaggttttgtaatctgagattaaaattaagtgctttatcaattgttccgatgtctgaaactgttcttaatttcaatgatcag

Basic information

species Arabidopsis thaliana
transcript AT1G64390.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G64390.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA05G36930.1 (Glycine max), 5'ss of exon 4
TTGTTTGATTTCGCCGACAAATACAGAGGAAAATACGACAGCAGTATCACTGTTGCCCAGAAATACTACCGATCCGTCAGCGGTTACAATgtaag-----atcccacag----gttttgtaatctg-------agattaaaattaagtgctttatcaattgttccgatgtctgaaactgttcttaatttcaatgatcag
 | |||||||| || |||||||||||||| ||||| |||||||| || || |||||||||||||| ||| ||||| |||| |||||||||||||       |   | |     ||||  | ||          |  ||||| || |     |    || | | ||  |   |||   ||||  |||||  || | ||||
CTATTTGATTTTGCTGACAAATACAGAGGCAAATATGACAGCAGCATTACGGTTGCCCAGAAATATTACAGATCCATCAGTGGTTACAATgtaattttttgttttataattgtgtttattgattcacccctttatgttaaagttgaacaaatacaaaactttcccattaattgag--tgttggtaattg-aacgttcag

upper sequence: AT1G64390.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA08G02610.1 (Glycine max), 5'ss of exon 4
TTGTTTGATTTCGCCGACAAATACAGAGGAAAATACGACAGCAGTATCACTGTTGCCCAGAAATACTACCGATCCGTCAGCGGTTACAATgtaagatcccacaggtt--ttgta---atctga--------gattaaaattaagtgctttatcaattgttccgatgtctgaaactgttcttaatttca-atgatcag------------------------------------------------------------------------------------
 | |||||||| || |||||||||||||| ||||| |||||||| ||||| |||||||| || || ||| ||||| |||| |||||||||||||| |      | ||  || |    || | |          |||||||| ||    | |  ||   |||| || |   ||| ||   | |  | || | |    |                                                                                    
CTATTTGATTTTGCTGACAAATACAGAGGCAAATATGACAGCAGCATCACGGTTGCCCAAAAGTATTACAGATCCATCAGTGGTTACAATgtaagtttttgttgtttaattatgtttatttcacccctttctgttaaaattgagcaaat-acaaaactttcccatttggaaaaatgaattaatgtgcatacggcatgcctaaattaaaattaaaaaaatcaattgcaaatgaaaggaaacaaaagtaacaattaattgagggttggtaattgaacgtgcag

upper sequence: AT1G64390.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv02s0025g01380.t01 (Vitis vinifera), 5'ss of exon 6
TTGTTTGATTTCGCCGACAAATACAGAGGAAAATACGACAGCAGTATCACTGTTGCCCAGAAATACTACCGATCCGTCAGCGGTTACAATgtaagatcccacaggttttgtaatctga-gattaaaattaag-tgctttatcaattgttccgatgt----------ctgaa---actgttcttaatttcaatgatcag---------
 |||| || || |  ||||||||||| || ||||| |||||||| ||||| || |||||||| |||||||| ||   ||| || |||  |||| |    || || | || | | ||   ||||  |  |  |    |  |    ||| || | ||           |||||   |||||     || |   | ||            
CTGTTCGAGTTTGGAGACAAATACAGGGGCAAATATGACAGCAGCATCACAGTGGCCCAGAAGTACTACCGGTCTTACAGTGGATACGCTgtacgtgatcatagctcttttgaactagtgattccatgtgggacagtgcacggtttggtctggtgcaccactttaactgaattaactgtatgacatgttggtaattgatgtttgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116479730|gb|EG522322.1|EG522322
EST:     GCAGTATCACTGTTGCCCAGAAATACTACCGATCCGTCAGCGGTTACAAT                         GACGAGTTATTGTGGGCCGCTGCGTGGCTATACCAAGCTTCGAACAATCAG
genomic: GCAGTATCACTGTTGCCCAGAAATACTACCGATCCGTCAGCGGTTACAATgtaagatccc ... caatgatcagGACGAGTTATTGTGGGCCGCTGCGTGGCTATACCAAGCTTCGAACAATCAG