1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ATTGCAAGAAAGCAAAGGTTCATGCTCCTGAGATTATTGTAGACAAGGACATTTTCCTTCCTCCTGCTCCTTCAGATGATGATCCTCATGCTCTTTCCTGgtaaaatttcatcaaaccaaaatactaaaagctatataagaatcaaaaactctaataccaatatggcacttgtggatatataacag
species | Arabidopsis thaliana |
transcript | AT1G64200.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCATGCTCTTTCCTG TGCAGGAGGTAGTGGTTTTGGCTTCTCGTGATGGGAAAATCGTGTGTGAAAEST: gi|124739114|gb|EH830276.1|EH830276
genomic: TCATGCTCTTTCCTGgtaaaatttc ... tatataacagTGCAGGAGG-AGTGGTTTTGGCTTCTCGTGATGGGAAAATCGTGTGTGAAA
EST: TCATGCTCTTTCCTG TGCAGGAGGAGTGG-TTTGGCTTCTCGTGATGGGAAAATCGTGTGTGAAAAEST: gi|116453488|gb|EG496080.1|EG496080
genomic: TCATGCTCTTTCCTGgtaaaatttc ... tatataacagTGCAGGAGGAGTGGTTTTGGCTTCTCGTGATGGGAAAATCGTGTGTGAAAA
EST: ATTTTCCTTCCTCCTGCTCCTTCAGATGATGATCCTCATGCTCTTTCCTG TGCAGGAGGAGTGGTTTTGGCTTCTCGTGATGGGAAAATAGTGTGTGAAAA
genomic: ATTTTCCTTCCTCCTGCTCCTTCAGATGATGATCCTCATGCTCTTTCCTGgtaaaatttc ... tatataacagTGCAGGAGGAGTGGTTTTGGCTTCTCGTGATGGGAAAATCGTGTGTGAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGCAAGAAAGCAAAGGTTCATGCTCCTGAGATTATTGTAGACAAGGACATTTTCCTTCCTCCTGCTCCTTCAGATGATGATCCTCATGCTCTTTCCTGgtaaaatttcatcaaaccaaaatactaaaagctatataagaatcaaaaactctaataccaatatggcacttgtggatatataacag
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