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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGCTGTTGCTTACAGATTATGTAAAAGTGAGCAAAGTGTCTGTGGAAGATATGTTGTTCGATGAACAAGACATCAACAAGTCTATGGACAAAATTGAGgttagtactgcattatattctatgactatgtttatactttgactgctccactaggtttgggataagttcaaaagaaattaaatctgcttcaaaactgtgattgttgagttaaggtttatatttgatttcctctatag

Basic information

species Arabidopsis thaliana
transcript AT1G61010.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G61010.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G422649_T01 (Zea mays), 5'ss of exon 4
CAAGCTGTTGCTTACAGATTATGTAAAAGTGAGCAAAGTGTCTGTGGAAGATATGTTGTTCGATGAACAAGACATCAACAAGTCTATGGACAAAATTGAGgttagtactgcattatattctatgactatgtttatactttgactgctccactaggtttgggataagttcaaaagaaattaaatctgcttcaaaactgtgattgttgagttaaggtttatatttgatttcctctatag
||||||| ||||  | |||||||| ||||| ||||||||||| ||||| ||||||||||  |||||    |||||       || ||||| ||||| |||||     || ||    |   |||  || |   | |||     ||| |    | | ||||    |||| ||  | | |     | |||||  | ||      ||   | || |   |  | ||||             
CAAGCTGCTGCTCTCGGATTATGTCAAAGTCAGCAAAGTGTCCGTGGAGGATATGTTGTATGATGAGAGTGACATTGCTCGCTCCATGGATAAAATCGAGgt--acgctaca----accttattgctgtacctttac-----ctgtt----tggctttga---aagtgcaggaaacagggtgt-tgcttatataca-----tgcatatttgatactggtgtttg-------------

upper sequence: AT1G61010.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv12s0035g00190.t01 (Vitis vinifera), 5'ss of exon 4
CAAGCTGTTGCTTACAGATTATGTAAAAGTGAGCAAAGTGTCTGTGGAAGATATGTTGTTCGATGAACAAGACATCAACAAGTCTATGGACAAAATTGAGgttagtactgcattatattctatgactatgtttatactttgactgctccactaggtttgggataagttcaaaagaaattaaatctgct-tcaaaactgtgattgttgagttaaggtttatatttgatttcctctatag
|||| || |  |  | ||||||||||||||||||||||| || || |||||||||||||  ||||||||||||||       || ||||| |||||||||||  ||  |   ||   || ||    |||||||  |  |    |  |  |  ||  |||  |||  ||      |  ||||     || ||  || ||   ||                                   
CAAGTTGCTTTTGTCTGATTATGTAAAAGTGAGCAAAGTTTCAGTTGAAGATATGTTGTATGATGAACAAGACATTCTTCGCTCCATGGATAAAATTGAGgtgcgt-ttatttttgtttatagatgtatgtttcaatctctgttttttta--agacttgtaatatttttcctcaattttaatctccctgtccgaattggtttt-----------------------------------

upper sequence: AT1G61010.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv12s0035g00170.t01 (Vitis vinifera), 5'ss of exon 4
CAAGCTGTTGCTTACAGATTATGTAAAAGTGAGCAAAGTGTCTGTGGAAGATATGTTGTTCGATGAACAAGACATCAACAAGTCTATGGACAAAATTGAGgttagtactgcattatattctatgactatgtttatactttgactgctccactaggtttgggataagttcaaaagaaattaaatctgcttcaaaactgtgattgttgagttaaggtttatatttgatttcctctatag
 ||| || |  |  | ||||||||||||||||||| ||| || || |||||||||||||  ||||||||||||||       || ||||| |||||||||||  ||  |   ||   || ||    |||||||  |  |   |   |    ||   |||  |||  |       |    |||   | ||  |||||    |   ||                               
TAAGTTGCTATTGTCTGATTATGTAAAAGTGAGCATAGTTTCAGTTGAAGATATGTTGTATGATGAACAAGACATTCTTCGCTCCATGGATAAAATTGAGgtgcgt-ttatttttgtttataaatgtatgtttcaatct---ccattttgttaa--ttgtaatatttctcctcaagtccaaactggttttgaaactaatctaaatg-------------------------------

upper sequence: AT1G61010.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv12s0035g00030.t01 (Vitis vinifera), 5'ss of exon 4
CAAGCTGTTGCTTACAGATTATGTAAAAGTGAGCAAAGTGTCTGTGGAAGATATGTTGTTCGATGAACAAGACATCAACAAGTCTATGGACAAAATTGAGgttagtactgcattatattctatgactatgtttatactttgactgctccactaggtttgggataagttcaaaagaaattaaatctgcttcaaaactgtgattgttgagttaaggtttatatttgatttcctctatag
|||| || |  |  | ||||||||||||||||||||||| || || |||||||||||||  ||||||||||||||       || ||||| |||||||||||  ||  |   ||   || ||    |||||||  |  |  | |  |  |  ||| |||  |||  |            |||   | ||  || ||    |                                    
CAAGTTGCTTTTGTCTGATTATGTAAAAGTGAGCAAAGTTTCAGTTGAAGATATGTTGTATGATGAACAAGACATTCTTCGCTCCATGGATAAAATTGAGgtgcgt-ttatttttgtttatagatgtatgtttcaatctccattttttta--aggcttgtaatatttctcctcacgtccaaactggttttgaagctaatctaa----------------------------------