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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCACTAAGGCATTCACTACAAGATAGGCTTAGCAAAGGAGCTTCAGGAAGGGGTCGTGATGAAATATACCTAAAACTTCGTACCAGCACAGgtaattcctttctacttgcacaatcataaatgggaatccctatttaatgcaacatccatattacccaagcctaagtcggataatgtcccctacttaagtg...

Basic information

species Arabidopsis thaliana
transcript AT1G59610.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G59610.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA07G40300.2 (Glycine max), 5'ss of exon 4
GTGCACTAAGGCATTCACTACAAGATAGGCTTAGCAAAGGAGCTTCAGGAAGGGGTCGTGATGAAATATACCTAAAACTTCGTACCAGCACAGgtaattcctttctacttgcacaatcataaatgggaatccctatttaatgcaacatccatattacccaagcctaagtcggataatgtcccctacttaagtg
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GCGCCCTTCGGCATTCTCTACAGGATAGACTAAGCAAAGGTTCATCTGGTAGGAGTCGTGATGAAATATATCTCAAACTACGTACCAGTACAGgtaagcccattat-----catattc-tatgttg----ctccatgcattggatcatgaaacttaatca--ttttgtcctgttctaaatttctacag-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86063710|gb|DR359467.1|DR359467
EST:     TTCGTACCAGCACAG                         CTCCACCACTGAAATTGATTGATTTGCCTGGAACTGGACCAGCGAATTGTG
genomic: TTCGTACCAGCACAGgtaattcctt ... ttaattgcagCTCCACCACTGAAATTGATTGATTTGCCTGG-ACTGGACCAGCGAATTGTG