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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATAGTTTCTTAACACAGCCTTTCCGTATCAAATATGCAAGGCAGGATATTCGTCTGTGTATGATGATCTCATTTACTCTGCCACTGGAACGATATGAGgtaacaatcccttaccattatgcattccattgaaatattctccgaaaggaactgaatgagaaccatccggcgtggatattgcgttcctgaaaggtttgaaatgattctacgtatgcag

Basic information

species Arabidopsis thaliana
transcript AT1G58350.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G58350.3 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA17G26570.1 (Glycine max), 5'ss of exon 3
TAATAGTTTCTTAACACAGCCTTTCCGTATCAAATATGCAAGGCAGGATATTCGTCTGTGTATGATGATCTCATTTACTCTGCCACTGGAACGATATGAGgtaacaatcccttaccattatgcattccattgaaatattctccgaaaggaactgaatgagaaccatccggcgtggatattgcgttcctgaaaggtttgaaatgattctacgtatgcag
 || ||||||| ||||||||| || || || |||||||| |||||||| |||| | | ||||||||||||||||| |   |  | || |   ||| |||||| |   | |  |    |  |   || | |     ||||    | || | |   | || ||     |     |||   |   |||       ||   || ||                
CAACAGTTTCTCAACACAGCCCTTTCGGATAAAATATGCTAGGCAGGACATTCATTTATGTATGATGATCTCATTCAACTTATCCCTTGGTAGATTTGAGgtgatctttctatcatttcttctctttcttgaggttattgaggggaaaggatatattgtgagatgccaatattgggcgtcaagttatctgttgg---gagatc---------------

upper sequence: AT1G58350.3 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA06G09480.1 (Glycine max), 5'ss of exon 3
TAATAGTTTCTTAACACAGCCTTTCCGTATCAAATATGCAAGGCAGGATATTCGTCTGTGTATGATGATCTCATTTACTCTGCCACTGGAACGA-TATGAGgtaacaatcccttaccattatgcattccattgaaatattctccgaaaggaactgaatgagaaccatccggcgtggatattgcgttcctgaaaggtttgaaatgattctacgtatgcag
||||||||||| ||||||| |||| || || ||||| || ||||||||| ||| | ||| ||||||||||   || |   |  | ||| |  || | || |||||        |  |||| |   |||  |  |  | |       ||  || |||  | | | | |  ||     | ||||  | | ||    |   | |    || |          
TAATAGTTTCTCAACACAGTCTTTTCGGATAAAATACGCTAGGCAGGATGTTCATTTGTATATGATGATCGTGTTCAACTTATC-CTGTAGTGAATTTGTGgtaatgtcaatctgtcatt-tcttttctttccatgtgt-------aataaagtgatagggcatcttgtgggaatcaaattgtat-cttgggtagcaggtatctgttatt---------