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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATGTGACTCGAACATCTGCTTTAGAATTTGAGGACTTCAACTCTGCGAAATCCCGTGTGCTTGAACGTGCTGAGAAATTTGGGGAAATATCTTGCAAGgtcagtgttctcttcgaacgggaattgtttacataaatagttagtagaagaagagtttgaacagtaactggaaattttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G53880.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G53880.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA19G45180.1 (Glycine max), 5'ss of exon 2
CTATGTGACTCGAACATCTGCTTTAGAATTTGAGGACTTCAACTCTGCGAAATCCCGTGTGCTTGAACGTGCTGAGAAATTTGGGGAAATATCTTGCAAGgtcagt----gttctcttcgaacgggaattgtttacataaatagttagtagaagaagagtttgaacagtaactggaaattttgcag
 ||||| ||||| || ||||||||||| | ||| |||||||| || || || || ||  || | |||||||||||||| ||||||||||| || | |||||  | |      ||||   | ||   |||| | |                   |   | |||      |  ||     ||||||||
ATATGTCACTCGCACTTCTGCTTTAGAGTATGAAGACTTCAATTCCGCTAAGTCTCGCTTGATCGAACGTGCTGAGAAGTTTGGGGAAATCTCCTACAAGgcaacttccaactctcgctgcactctaattttcttttctttcctcactctcttgcccattttcctttctttct-----ttttgcag