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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAAAGCTGTGATACAGCACCTTTACATGGGAAGAAACCCACCTCTGTTGACTGATATTAGGGTCCTTCGTCAATCTACGGGTGATGATCACTTGgtatatttgtaacgcctcatagaacatcatactttggcctcttccctccttgatctatagtagaacttatgctggagtttatgcag

Basic information

species Arabidopsis thaliana
transcript AT1G53590.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G53590.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA13G33580.1 (Glycine max), 5'ss of exon 4
AAAAAAGCTGTGATACAGCACCTTTACATGGGAAGAAACCCACCTCTGTTGACTGATATTAGGGTCCTTCGTCAATCTACGGGTGATGATCACTTGgtatatttgtaacgcctcatagaacatcatactttggcc-tcttccctccttgatctatagtagaacttatgctggagtttatgcag-----------------------
||| |||||||  | |||||||| ||||||||||||||||||||| || | |||||  ||||||| ||||| ||   |   | ||||||||||||||||| |    ||    |   | | || |||||   ||   | ||   | ||  |||| |    ||| || || |   ||| ||  ||                       
AAAGAAGCTGTCGTTCAGCACCTATACATGGGAAGAAACCCACCTTTGATCACTGAAGTTAGGGTTCTTCGCCAGAGT---GATGATGATCACTTGgtatgtg---aaaatttttcaaagcagcataccaagggaatgttttgttctgcatctgtgaatgaaattttgttcaggttgatttagatattaatgtgtgattcatgtag

upper sequence: AT1G53590.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv19s0138g00140.t01 (Vitis vinifera), 5'ss of exon 4
AAAAAAGCTGTGATACAGCACCTTTACATGGGAAGAAACCCACCTCTGTTGACTGATATTAGGGTCCTTCGTCAATCTACGGGTGATGATCACTTGgtatatttg--taacgcc----tcatagaac--------atcatactttggcctcttccctccttgatctatagtagaacttatgctggagtttatgcag
|| |||||  |  | |||||| | ||||||||||||||||||||| |||| || || || |||||| ||||| ||||||| | ||||||||||||||||| ||||  || | |     |  | ||||         | ||   ||||  |  |     | | |    |   |||     || |  | || ||||||
AAGAAAGCCATTGTTCAGCACTTGTACATGGGAAGAAACCCACCTATGTTCACAGAAATGAGGGTCATTCGTGAATCTACAGATGATGATCACTTGgtatgtttgactagccctggaatggtggaaccttactgtgttatctattgggatactattgacataagtcttcagagattcagtgattcaattaatgcag