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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATATGCTGAGAATGGATATGAAAATCCAAGCTACTTCTGATGTTGCTCATCTCAGAAAAGCGGCAATGCTATACACTGCTTCTATTAGCAATCATGTGgtgagttgtttgtaacagacagttattgttgcaccatttttaagactaacaatgatacatactttgaaatgtttacattaacctgctgtatgttttgctcttgtttcaaaag

Basic information

species Arabidopsis thaliana
transcript AT1G53140.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G53140.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv19s0014g02500.t01 (Vitis vinifera), 5'ss of exon 5
TGATATGCTGAGAATGGATATGAAAATCCAAGCTACTTCTGATGTTGCTCATCTCAGAAAAGCGGCAATGCTATACACTGCTTCTATTAGCAATCATGTGgtgagttgtttgtaacagacagttattgttgcaccatttttaagactaacaatgatacatactttgaaatgtttacattaacctgctgtatgttttgctcttgtttcaaaag
|||  ||   ||| |||||   ||||| || ||||||||||||||||| ||||| |||| |   ||||||||  ||||||| || || ||||||||||||||| || ||    |||    |  | ||       || |   | | || | ||| ||   |  |||   |       |  |  ||    |||| |||  |  | |        
TGAGTTGGCTAGATTGGATTCCAAAATACAGGCTACTTCTGATGTTGCACATCTAAGAAGATGTGCAATGCTGCACACTGCCTCCATCAGCAATCATGTGgtgtgtagt---caacgctaatatcttccaatttcaatacaatgtctga-aattatgtcttgtttagtacagaacaaacattctcacatatgatttaataattt--------