1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AATGTTTGTGTCTTCGGTGAAGAGGCTGCGTGTGATTAAAACTTCTGAGATTTCTTCAGCATTAACATgtaagtgtaggattttaataacattttttagttgttttggtgactcttttaagtgaagttcttagaatgtttttttgttgttttgaaatttgcag
species | Arabidopsis thaliana |
transcript | AT1G51950.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAAGAGGCTGCGTGTGATTAAAACTTCTGAGATTTCTTCAGCATTAACAT ATGGAAATGGTAAGCAAGAGAAAATGAGAAGATGAAGAAAAAGATCTTTTAEST: gi|125136137|gb|EL176167.1|EL176167
genomic: GAAGAGGCTGCGTGTGATTAAAACTTCTGAGATTTCTTCAGCATTAACATgtaagtgtag ... aaatttgcagATGGAAATGGTAAGCAAGAGAAAATGAGAAGATGAAGAAAAAGATCTTTTA
EST: GCTGCGTGTGATTAAAACTTCTGAGATTTCTTCAGCATTAACAT ATGGAAATGGTAAGCAAGAGAAAATGAGAAGATGAAGAAAAAGATCTTTTAEST: gi|86075257|gb|DR371014.1|DR371014
genomic: GCTGCGTGTGATTAAAACTTCTGAGATTTCTTCAGCATTAACATgtaagtgtag ... aaatttgcagATGGAAATGGTAAGCAAGAGAAAATGAGAAGATGAAGAAAAAGATCTTTTA
EST: GAAGAGGCTGCGTGTGATTAAAACTTCTGAGATTTCTTCAGCATTAACAT ATGGAAATGGTAAGCAAGAGAAAATGAGAAGATGAAGAAAAAGATCTTTTA
genomic: GAAGAGGCTGCGTGTGATTAAAACTTCTGAGATTTCTTCAGCATTAACATgtaagtgtag ... aaatttgcagATGGAAATGGTAAGCAAGAGAAAATGAGAAGATGAAGAAAAAGATCTTTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGTTTGTGTCTTCGGTGAAGAGGCTGCGTGTGATTAAAACTTCTGAGATTTCTTCAGCATTAACATgtaagtgtaggattttaataacattttttagttgttttggtgactcttttaagtgaagttcttagaatgtttttttgttgttttgaaatttgcag
- - - - - - - - - AAGAGG