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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATAATGATATTTGCTTCTTCTCATTTCGTTTTATCTCATCTCCCAAACTTCAACTCCATCTCGGGTGTCTCTCTTGTTGCGGCCGTCATGTCTCTTAGgtatacttaataaatcttatattctcatagttatatttaaacatgtgcatagtttatgacctgaaaacctgatatattgtaaatgatgaaagttcaagtatgcttctaaaatatttttacattttttttcaaaaagtggtacatgattcatcatttatgtgtgtttttag

Basic information

species Arabidopsis thaliana
transcript AT1G48640.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G48640.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv14s0171g00400.t01 (Vitis vinifera), 5'ss of exon 3
TCATAATGATATTTGCTTCTTCTCATTTCGTTTTATCTCATCTCCCAAACTTCAACTCCATCTCGGGTGTCTCTCTTGTTGCGGCCGTCATGTCTCTTAGgtatacttaataaatcttatattctcatagttat-atttaaacatgtgcatagtttatgacctgaaaacctgatatattgtaaatgatgaaagttcaagtatgcttctaaaatatttttacattttttttcaaaaagtggtacatgattcatcatttatgtgtgtttttag
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TCATCATGATCTTCGCCTCTGTTCATTTCGTGCTCTCCCATCTCCCCAACTTCAACTCCATCTCTGGTGTTTCTCTTGCAGCTGCAGTCATGTCCTTGAGgtac---caattgatcttaagaaatgaaactgctgatccaagtgtgagccaaacacaataac---atatttgatgttttgtga-tgcag----------------------------------------------------------------------------------