Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACGTACCAATGTGGAGAGGAGCCAAAATCTCTTACTTCCTCATTGCTCTGTGTATCTTTCCAATCTCCATCGGAGGCTTTTGGGCTTATGGGAACCTTgtaagttccatttactatatcttttgtttatgtcttgtcagtgaaggatgtttatctggtgtttggttcatgttagtgaaatatagaattcaaaaggaacactaatatcatttatttatagttcgttttctgatctttggttcaatttccggattagtttgaagttattttttcttggtcttatag

Basic information

species Arabidopsis thaliana
transcript AT1G47670.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G47670.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv18s0001g11300.t01 (Vitis vinifera), 5'ss of exon 4
TCACGTACCAATGTGGAGAGGAGCCAAAATCTCTTACTTCCTCATTGCTCTGTGTATCTTTCCAATCTCCATCGGAGGCTTTTGGGCTTATGGGAACCTTgtaagttccatttactatatcttttgtttatgtcttgtcagtgaaggatgtttatctggtgtttggttcatgttagtgaaatatagaattcaaaaggaacactaatatcatttatttatagttcgttttctgatctttggttcaatttccggattagtttgaagttattttttcttggtcttatag
||| || || |||||||| || || ||| |  | ||  |  | |||||  |||| || |||||  || |||| ||||| |||||||||||||| ||||||||||||       |  | |    || ||||| |||  |||||      |||  |  |  ||        || ||  | |   |   |||| | ||| ||||| ||||                                                                               
TCATGTTCCTATGTGGAGGGGGGCTAAAGTTGCCTATGTGTTGATTGCCATGTGCATATTTCCTGTCGCCATTGGAGGTTTTTGGGCTTATGGAAACCTTgtaagtctg--ccagcagaagccttctttat-tctgttcagtac---gtgtgcacgtaatgaaataggaatatttttaagggaagaaatttacaag-aacacaaata-------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86078837|gb|DR374594.1|DR374594
EST:     TGTGTATCTTTCCAATCTCCATCGGAGGCTTTTGGGCTTATGGGAACCTT                         ATGCCTTCAGGAGGTATGCTTGCTGCTTTGTATGCATTCCACATTTACGAT
genomic: TGTGTATCTTTCCAATCTCCATCGGAGGCTTTTGGGCTTATGGGAACCTTgtaagttcca ... ggtcttatagATGCCTTCAGGAGGTATGCTTGCTGCTTTGTATGCATTCCACATTCACGAT