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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTCATCTTTGATCTGCATCCAAACTACAAGAATATTCACACGAAGATATATGTTCGTGTTACCAACCTACCAGTTAATGATCAGATTCGGAACATCAGgtaataatatcgctgaattcatgggtagtgactcactttgtatacattttcaagatttcaacttaaaccttattgtttgtgaattgtcag

Basic information

species Arabidopsis thaliana
transcript AT1G44900.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164124301|gb|EL997443.1|EL997443
EST:     GATTCGGAACATCAG                         GCTAGATTCATCTTAACACGATGATCCGTATCGGTGGAGTTGTCACTAGGC
genomic: GATTCGGAACATCAGgtaataatat ... gaattgtcagGC-AGATTCATCTTAACACGATGATCCGTATCGGTGGAGTTGTCACTAGGC
EST: gi|116375881|gb|EG418473.1|EG418473
EST:     TATGTTCGTGTTACCAACCTACCAGTTAATGATCAGATTCGGAACATCAG                         GCAGATTCATCTTAACACGATGATCCGTATCGGTGGAGTTGTCACTAGGCG
genomic: TATGTTCGTGTTACCAACCTACCAGTTAATGATCAGATTCGGAACATCAGgtaataatat ... gaattgtcagGCAGATTCATCTTAACACGATGATCCGTATCGGTGGAGTTGTCACTAGGCG
EST: gi|116375882|gb|EG418474.1|EG418474
EST:     TATGTTCGTGTTACCAACCTACCAGTTAATGATCAGATTCGGAACATCAG                         GCAGATTCATCTTAACACGATGATCCGTATCGGTGGAGTTGTCACTAGGCG
genomic: TATGTTCGTGTTACCAACCTACCAGTTAATGATCAGATTCGGAACATCAGgtaataatat ... gaattgtcagGCAGATTCATCTTAACACGATGATCCGTATCGGTGGAGTTGTCACTAGGCG
EST: gi|163980351|gb|ES161484.1|ES161484
EST:     TATGTTCGTGTTACCAACCTACCAGTTAATGATCAGATTCGGAACATCAG                         GCAGATTCATCTTAACACGATGATCCGTA
genomic: TATGTTCGTGTTACCAACCTACCAGTTAATGATCAGATTCGGAACATCAGgtaataatat ... gaattgtcagGCAGATTCATCTTAACACGATGATCCGTA