1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATGTTTTACCTGGTTGGCGAGAAACAATGGAGAAATATCATCAAGAAGCATTgtgagtctcatctttggtttggccttgtttatttcaataatttatctgtgtgttgaaaatctgaaaaaagtataactatatgaacaaattatttcaccaaacttttcgcctttaatatgatgagacgtttttgtatggtcag
species | Arabidopsis thaliana |
transcript | AT1G35190.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GTTTTACCTGGTTGGCGAGAAACAATGGAGAAATATCATCAAGAAGCATT GAGGGTT-CTATGGCTATTGCAAGACTEST: gi|86031340|gb|DR327093.1|DR327093
genomic: GTTTTACCTGGTTGGCGAGAAACAATGGAGAAATATCATCAAGAAGCATTgtgagtctca ... gtatggtcagGAGGGTTTCTATGGCTATTGCAAGACT
EST: GTTTTACCTGGTTGGCGAGAAACAATGGAGAAATATCATCAAGAAGCATT GAGGGTTTCTATGGCTATTGCAAGEST: gi|86031341|gb|DR327094.1|DR327094
genomic: GTTTTACCTGGTTGGCGAGAAACAATGGAGAAATATCATCAAGAAGCATTgtgagtctca ... gtatggtcagGAGGGTTTCTATGGCTATTGCAAG
EST: GTTTTACCTGGTTGGCGAGAAACAATGGAGAAATATCATCAAGAAGCATT GAGGGTTTCTATGGCTATTEST: gi|86031351|gb|DR327104.1|DR327104
genomic: GTTTTACCTGGTTGGCGAGAAACAATGGAGAAATATCATCAAGAAGCATTgtgagtctca ... gtatggtcagGAGGGTTTCTATGGCTATT
EST: GTTTTACCTGGTTGGCGAGAAACAATGGAGAAATATCATCAAGAAGCATT GAGGGTTTCTATGG
genomic: GTTTTACCTGGTTGGCGAGAAACAATGGAGAAATATCATCAAGAAGCATTgtgagtctca ... gtatggtcagGAGGGTTTCTATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGTTTTACCTGGTTGGCGAGAAACAATGGAGAAATATCATCAAGAAGCATTgtgagtctcatctttggtttggccttgtttatttcaataatttatctgtgtgttgaaaatctgaaaaaagtataactatatgaacaaattatttcaccaaacttttcgcctttaatatgatgagacgtttttgtatggtcag
- - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - AGAAGC