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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACCTTCACTCTCTCTAACCTAGGAATGTTTGGCGTTGATCGGTTTGATGCTATTCTACCCCCTGGAACAgttagtgcttttacctttatgcgtgtattttagtttgtatcttggttatgtcttttagcctaataattatgctaaggataacagctcattggttttcttgtctttgatcaatgaag

Basic information

species Arabidopsis thaliana
transcript AT1G34430.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G34430.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA20G31630.1 (Glycine max), 5'ss of exon 5
GTACCTTCACTCTCTCTAACCTAGGAATGTTTGGCGTTGATCGGTTTGATGCTATTCTACCCCCTGGAACAgttagtgcttttacctttatgcgtgtattttagtttgtatcttggttatgtcttttagcctaataat----tatgctaaggataacagctcattggttttcttgtctttgatcaatgaag
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GTACTTTCACTCTGTCCAATCTGGGAATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACTgtgagtg-ttttacttgtgttcaaatatggcaagagattgactagttgttccaattagaacagtgatgggtcacacgaaaatgatcattctatggatttatttgtgtag-----------

upper sequence: AT1G34430.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA10G35960.1 (Glycine max), 5'ss of exon 5
GTACCTTCACTCTCTCTAACCTAGGAATGTTTGGCGTTGATCGGTTTGATGCTATTCTACCCCCTGGAACAgttagtgcttttacctttatgcgtgtattttagtttgtatcttggttatgtcttttagc--ctaataattatgctaaggataacagctcattggttttcttgtctttgatcaatgaag
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GTACTTTCACTCTGTCCAATCTGGGAATGTTTGGTGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACTgtgagtg-ttttactcgtgctcaaatatggcaagagattgactagttgttccaattagaagtttagaacagtgatgggaaacacgaat-atgatccttctctggatatatttctgtag

upper sequence: AT1G34430.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv18s0072g01000.t01 (Vitis vinifera), 5'ss of exon 4
GTACCTTCACTCTCTCTAACCTAGGAATGTTTGGCGTTGATCGGTTTGATGCTATTCTACCCCCTGGAACAgttagtgcttttacc-----tttatgcgtgt--atttt----agtttgtatcttggt-----tatgtcttttagcctaataattatgctaaggataacagctcattggttttcttgtctttgatcaatgaag
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GTACTTTCACTCTTTCAAACCTTGGAATGTTTGGTGTGGATCGGTTTGACGCAATTCTGCCACCTGGAACTgtaagtatttaaactcagaatttgaacctctccactctgcaaaattcatagcttggggcagatatggaatgagggggactaaattgtatcaggataaacataattatgttgatttgcatgttttttctgcag