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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACCTTCACTCTCTCTAACCTAGGAATGTTTGGCGTTGATCGGTTTGATGCTATTCTACCCCCTGGAACAgttagtgcttttacctttatgcgtgtattttagtttgtatcttggttatgtcttttagcctaataattatgctaaggataacagctcattggttttcttgtctttgatcaatgaag

Basic information

species Arabidopsis thaliana
transcript AT1G34430.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G34430.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA20G31630.1 (Glycine max), 5'ss of exon 5
GTACCTTCACTCTCTCTAACCTAGGAATGTTTGGCGTTGATCGGTTTGATGCTATTCTACCCCCTGGAACAgttagtgcttttacctttatgcgtgtattttagtttgtatcttggttatgtcttttagcctaataat----tatgctaaggataacagctcattggttttcttgtctttgatcaatgaag
|||| |||||||| || || || |||||||||||||||||||| |||||||||||||| || |||||||| || |||| |||||| | | | |   |||   |     |    | ||| |  |  ||||   | | ||     |  | ||    | ||    || | |||  |||| |             
GTACTTTCACTCTGTCCAATCTGGGAATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACTgtgagtg-ttttacttgtgttcaaatatggcaagagattgactagttgttccaattagaacagtgatgggtcacacgaaaatgatcattctatggatttatttgtgtag-----------

upper sequence: AT1G34430.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA10G35960.1 (Glycine max), 5'ss of exon 5
GTACCTTCACTCTCTCTAACCTAGGAATGTTTGGCGTTGATCGGTTTGATGCTATTCTACCCCCTGGAACAgttagtgcttttacctttatgcgtgtattttagtttgtatcttggttatgtcttttagc--ctaataattatgctaaggataacagctcattggttttcttgtctttgatcaatgaag
|||| |||||||| || || || ||||||||||| |||||||| |||||||||||||| || |||||||| || |||| ||||||   |   |   |||   |     |    | ||| |  |  ||||    | | ||   || |  | |  ||   | ||     ||||     |  ||   || ||
GTACTTTCACTCTGTCCAATCTGGGAATGTTTGGTGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACTgtgagtg-ttttactcgtgctcaaatatggcaagagattgactagttgttccaattagaagtttagaacagtgatgggaaacacgaat-atgatccttctctggatatatttctgtag

upper sequence: AT1G34430.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv18s0072g01000.t01 (Vitis vinifera), 5'ss of exon 4
GTACCTTCACTCTCTCTAACCTAGGAATGTTTGGCGTTGATCGGTTTGATGCTATTCTACCCCCTGGAACAgttagtgcttttacc-----tttatgcgtgt--atttt----agtttgtatcttggt-----tatgtcttttagcctaataattatgctaaggataacagctcattggttttcttgtctttgatcaatgaag
|||| |||||||| || ||||| ||||||||||| || ||||||||||| || ||||| || |||||||| || |||  ||  ||      |||   | | |  | | |    | ||  || |||||      ||||   |   |   | ||| |    | |||||||       |  |||   |||  | |  |   || ||
GTACTTTCACTCTTTCAAACCTTGGAATGTTTGGTGTGGATCGGTTTGACGCAATTCTGCCACCTGGAACTgtaagtatttaaactcagaatttgaacctctccactctgcaaaattcatagcttggggcagatatggaatgagggggactaaattgtatcaggataaacataattatgttgatttgcatgttttttctgcag