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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGAGTTGAGGATTTTTTCTGGAGAGGTGGTGCGTTTTGGGAATCGTTGCAAGGATCCTCAATACCACAACCTGGATCGTTTCTTTGACAGgttccaacatgatcctgtcactttggtggtcacacaacgggtgtattccttttggaaagtatctgacttttcattagttctgtgttatgatttag

Basic information

species Arabidopsis thaliana
transcript AT1G34320.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G34320.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA20G31400.1 (Glycine max), 5'ss of exon 6
GGAAGAGTTGAGGATTTTTTCTGGAGAGGTGGTGCGTTTTGGGAATCGTTGCAAGGATCCTCAATACCACAACCTGGATCGTTTCTTTGACAGgt--tccaacatgatcctgtcactttggtggtcacacaacgggtgtattccttttggaaagtatctgacttttcatta-gttctgtgttatgatttag---------------------------------------
 ||||||||||  || |||||||| || || ||||||||||| |||||||| || ||||||||||  |||||||||||||| |  ||||| | ||  |   |  ||| | | | | | |  | ||         | | || ||   ||  |  | || | |  || | |||  || | |  ||  || ||                                        
AGAAGAGTTGAAAATATTTTCTGGTGAAGTTGTGCGTTTTGGAAATCGTTGTAAAGATCCTCAATGGCACAACCTGGATCGCTATTTTGAGAAgtaattgtagttgaacttattaatct--ttgtatttttttagatctaatctagttaaattg-atttaatcttaccttatattttcttgtaacatctaacgtgttagttatttattttttttctttgttgatgtttag

upper sequence: AT1G34320.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA10G36210.1 (Glycine max), 5'ss of exon 6
GGAAGAGTTGAGGATTTTTTCTGGAGAGGTGGTGCGTTTTGGGAATCGTTGCAAGGATCCTCAATACCACAACCTGGATCGTTTCTTTGACAGgtt------------ccaacatgatcctgtcactttggtggtca---cacaacgggtg-----------tattccttttggaaagtatctgacttttcattagttctg---tgttatgatttag-----------
 ||||| ||||  || |||||||| || || ||||||||||| |||||||| || ||||||||||  |||||||||||||| |  ||||| | ||                |  | ||| |||   |||       |    | | | | ||           ||||  || | | ||  |||| || ||   |||||| ||   |  | ||  || |           
AGAAGAATTGAAAATATTTTCTGGTGAAGTTGTGCGTTTTGGAAATCGTTGTAAAGATCCTCAATGGCACAACCTGGATCGCTATTTTGAGAAgtaattgtagttgaattgatttaatcttgtattttttagaactagtctagatcagttgatctttccttatattttttcttgtaa-catctaacattgtgttagttatggttttctttgtctttgttgatgtttag

upper sequence: AT1G34320.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv18s0076g00260.t01 (Vitis vinifera), 5'ss of exon 3
GGAAGAGTTGAGGATTTTTTCTGGAGAGGTGGTGCGTTTTGGGAATCGTTGCAAGGATCCTCAATACCACAACCTGGATCGTTTCTTTGACAGgt---tccaacatgatcctgtcactttggtggtcacacaacgggtgtattccttttggaaagtatctgacttttcattagttctgtgtt--atgatttag-
||||||  |||  |||||||||||||| ||||| |||||||||||||| || || |||||||| |  |||||| |||| |||| |||||| | ||    |  |  | ||| ||||    |   | |        |  |  |  | |    ||     |     | ||| || || |||| ||  |||||||   
GGAAGAACTGAAAATTTTTTCTGGAGAAGTGGTCCGTTTTGGGAATCGATGTAAAGATCCTCAGTGGCACAACTTGGACCGTTACTTTGAGAAgtaatcctgatgttatcttgtctaacttacgctttatgtgtgatttaagacatcaaagatgaggttctcatgttcttttgtgctgtcttctatgattttag