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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTTGACTGTCGCATATGCGGTGACCCAAACTCGGTCCTTCGGTTTGCATTCATAGAGTTCACTGATGAAGgtattatttcattttctcggttctggagtatcatcagtgtactacagtggttaaatgtcttgtggttttgttttcag

Basic information

species Arabidopsis thaliana
transcript AT1G32790.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G32790.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os08g02330.1 (Oryza sativa), 5'ss of exon 4
GTTGTTGACTGTCGCATATGCGGTGACCCAAACTCGGTCCTTCGGTTTGCATTCATAGAGTTCACTGATGAAGgtattatttcattttctcggttctggagtatcatcagtgtactacagtggttaaatgtcttgtggttttgttttcag---
||||| |||||||| || || || || || || || || ||||| ||||| |||||||||||||||||||| ||||       | |      ||  |     | |||     ||   || | || || ||  |  |    |  | | | |   
GTTGTGGACTGTCGTATGTGTGGGGATCCGAATTCTGTTCTTCGTTTTGCTTTCATAGAGTTCACTGATGAGGgta-------agtggtcgagtgataattaagcatatacttagatcaatagtcaattggttaataaactgctctgctgcag

upper sequence: AT1G32790.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G173428_T02 (Zea mays), 5'ss of exon 3
GTTGTTGACTGTCGCATATGCGGTGACCCAAACTCGGTCCTTCGGTTTGCATTCATAGAGTTCACTGATGAAGgtattat-ttcattttc--tcggttctgga---gtatcatcagtgtacta---cagtggttaaatgtcttgtgg---ttttgttttcag
||||| ||||||||||| || || ||||||||||| ||||||||||| || |||||||||||||||||||| |||| ||| | ||| | |   | | | |  |   |  |  |  ||||| |    |    ||| | ||  |  ||    |  |  || |||
GTTGTGGACTGTCGCATGTGTGGAGACCCAAACTCAGTCCTTCGGTTCGCCTTCATAGAGTTCACTGATGAGGgtaatatatccatatccaaccagatttcaatttgcttactttgtgtaatgaatctactgttcattgggtaatgaacatccttgttccag

upper sequence: AT1G32790.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G175541_T02 (Zea mays), 5'ss of exon 4
GTTGTTGACTGTCGCATATGCGGTGACCCAAACTCGGTCCTTCGGTTTGCATTCATAGAGTTCACTGATGAAGgtattat-ttcattttct-cggttctggagtatcatcagtgtactacagtggttaaatgtcttgtggttttgttttcag-----------
||||| ||||||||||| || || |||||||| || |||||| ||||||| |||||||||||||||||||| |||| ||| | ||| | |  |  |  |  ||| |  | | | |  |  | ||| |  |    || |||  |      ||            
GTTGTGGACTGTCGCATGTGTGGGGACCCAAATTCAGTCCTTAGGTTTGCTTTCATAGAGTTCACTGATGAGGgtaatatatccatatacaaccatgtttcagtttgcttactctg-tgtaatggatctactgtttatggggtgaaaaacatcgatgtcctag

upper sequence: AT1G32790.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G044246_T02 (Zea mays), 5'ss of exon 4
GTTGTTGACTGTCGCATATGCGGTGACCCAAACTCGGTCCTTCGGTTTGCATTCATAGAGTTCACTGATGAAGgtattatttcattttct--cggttctggagtatcatcagtgtactacagtggttaaatgtcttgtggttttgttttcag-----------
||||| ||||||||||| || || |||||||| || |||||| ||||||| |||||||||||||||||||| |||| ||| ||  | ||   |  |  |  ||| |  | | | |  |  | ||| |  |    || |||  |      ||            
GTTGTGGACTGTCGCATGTGTGGGGACCCAAATTCAGTCCTTAGGTTTGCTTTCATAGAGTTCACTGATGAGGgtaatatatccatatccaaccatgtttcagtttgcttactctg-tgtaatggatctactgtttatggggtgaaaaacatcgatgtcccag

upper sequence: AT1G32790.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G014573_T01 (Zea mays), 5'ss of exon 2
GTTGTTGACTGTCGCATATGCGGTGACCCAAACTCGGTCCTTCGGTTTGCATTCATAGAGTTCACTGATGAAGgtattatttcattttct--cggttctggagtatcatcagtgtactacagtggttaaatgtcttgtggttttgttttcag-----------
||||| ||||||||||| || || |||||||| || |||||| ||||||| |||||||||||||||||||| |||| ||| ||  | ||   |  |  |  ||| |  | | | |  |  | ||| |  |    || | |  |      ||            
GTTGTGGACTGTCGCATGTGTGGGGACCCAAATTCAGTCCTTAGGTTTGCTTTCATAGAGTTCACTGATGATGgtaatatatccatatccaaccatgtttcagtttgcttactatg-tgtaatggatctacagtttatcgggtgaaaaacatcgatgtcccag

upper sequence: AT1G32790.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G069102_T03 (Zea mays), 5'ss of exon 4
GTTGTTGACTGTCGCATATGCGGTGACCCAAACTCGGTCCTTCGGTTTGCATTCATAGAGTTCACTGATGAAGgtattatttcattttctcg--gttctggagtatcatcagtgtactacagtggttaaatgtcttgtggttttgttttcag----------------------
||||| ||||||||||| || || |||||||| || |||||| ||||||| |||||||||||||||||||| |||| ||| ||  | || |    |  |  ||| |  | | | || |  | ||| |  |    || | |  |      ||                       
GTTGTGGACTGTCGCATGTGTGGGGACCCAAATTCAGTCCTTAGGTTTGCTTTCATAGAGTTCACTGATGAGGgtaatatatccatatcccaccatgtttcagtttgcttactcta-tgtaatggatctactgtttatcgggtgaaaaacatcgatgtcccagagggtgcaaga

upper sequence: AT1G32790.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G349794_T01 (Zea mays), 5'ss of exon 5
GTTGTTGACTGTCGCATATGCGGTGACCCAAACTCGGTCCTTCGGTTTGCATTCATAGAGTTCACTGATGAAGgtattatttcattttct--cggttctggagtatcatcagtgtactacagtggttaaatgtcttgtggttttgttttcag-----------
||||| ||||||||||| || || |||||||| || |||||| ||||||| |||||||||||||||||||| |||| ||| ||  | ||   |  |  |  ||| |  | | | |  |  | ||| |  |    || | |  |      ||            
GTTGTGGACTGTCGCATGTGTGGGGACCCAAATTCAGTCCTTAGGTTTGCTTTCATAGAGTTCACTGATGATGgtaatatatccatatccaaccatgtttcagtttgcttactatg-tgtaatggatctacagtttatcgagtgaaaaacatcgatgtccaag

upper sequence: AT1G32790.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G069102_T01 (Zea mays), 5'ss of exon 4
GTTGTTGACTGTCGCATATGCGGTGACCCAAACTCGGTCCTTCGGTTTGCATTCATAGAGTTCACTGATGAAGgtattatttcattttctcg--gttctggagtatcatcagtgtactacagtggttaaatgtcttgtggttttgttttcag-----------
||||| ||||||||||| || || |||||||| || |||||| ||||||| |||||||||||||||||||| |||| ||| ||  | || |    |  |  ||| |  | | | || |  | ||| |  |    || | |  |      ||            
GTTGTGGACTGTCGCATGTGTGGGGACCCAAATTCAGTCCTTAGGTTTGCTTTCATAGAGTTCACTGATGAGGgtaatatatccatatcccaccatgtttcagtttgcttactcta-tgtaatggatctactgtttatcgggtgaaaaacatcgatgtcccag

upper sequence: AT1G32790.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G036634_T01 (Zea mays), 5'ss of exon 13
GTTGTTGACTGTCGCATATGCGGTGACCCAAACTCGGTCCTTCGGTTTGCATTCATAGAGTTCACTGATGAAGgtattatttcattttctcggttctggagtatcatcagtgtactacagtggttaaatgtcttgtggttttgttttcag---------------
||||| ||||||| ||| || || ||||||||||| ||||||| |||||| |||||||||||||||||||| |||| ||| ||  | ||      |  || |   ||  |  ||||        | ||| |  |||   || | |                    
GTTGTGGACTGTCACATGTGTGGAGACCCAAACTCAGTCCTTCAGTTTGCCTTCATAGAGTTCACTGATGAGGgtaatatatccatatccaa---ccagatttcaatttgcttactttgtgtaatgaatctactgttcattgggtaatgaacatccatgttccag

upper sequence: AT1G32790.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G132286_T01 (Zea mays), 5'ss of exon 3
GTTGTTGACTGTCGCATATGCGGTGACCCAAACTCGGTCCTTCGGTTTGCATTCATAGAGTTCACTGATGAAGgtattatttcattttctcggttctggagtatcatcagtgtactacagtggttaaatgtcttgtggttttgttttcag---------------
||||| ||||||| ||| || || ||||||||||| |||||||||||  | |||||||||||||||||||| |||| ||| ||  | ||      |  || |   ||  |  ||||        | ||| |  |||   || | |                    
GTTGTGGACTGTCACATGTGTGGAGACCCAAACTCAGTCCTTCGGTTCACCTTCATAGAGTTCACTGATGAGGgtaatatatccatatccaa---ccagatttcaatttgcttactttgtgtaatgaatctactgttcattgggtaatgaacatccatgttccag

upper sequence: AT1G32790.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G376619_T01 (Zea mays), 5'ss of exon 5
GTTGTTGACTGTCGCATATGCGGTGACCCAAACTCGGTCCTTCGGTTTGCATTCATAGAGTTCACTGATGAAGgtattatttcattttct--cggttctggagtatcatcagtgtactacagtggttaaatgtcttgtggttttgttttcag----------------------------------------------------------------------------------------------------
||||| || |||||||| || || |||||||| || |||||| ||||||| |||||||||||||||||||| |||| ||| ||  | ||   |  |  |  ||| |  | | | |  |  | ||| |  |    || | |  |      ||                                                                                                     
GTTGTGGAGTGTCGCATGTGTGGGGACCCAAATTCAGTCCTTAGGTTTGCTTTCATAGAGTTCACTGATGAGGgtaatatatccatatccaaccatgtttcagtttgcttactctg-tgtaatggatctactgtttatcgggtgaaaaacatcgatgtcccagagggtgcaagggctgctctgaatctgtcaggaaccgtgcttggatattatcctatcaatgttctaccgtcaaaaactgcattgcaccag

upper sequence: AT1G32790.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G457231_T01 (Zea mays), 5'ss of exon 6
GTTGTTGACTGTCGCATATGCGGTGACCCAAACTCGGTCCTTCGGTTTGCATTCATAGAGTTCACTGATGAAGgtattatttcattttct--cggttctggagtatcatcagtgtactacagtggttaaatgtct-tgtggttttgttttcag--------
||||| ||||||||||| || || |||||||| || |||||| ||||||| |||||||||||| ||||||| |||| ||| ||  | ||   |  |  |  ||| |  | | | |     |  | |  | ||| | |  |||       ||          
GTTGTGGACTGTCGCATGTGTGGGGACCCAAATTCAGTCCTTAGGTTTGCTTTCATAGAGTTCGCTGATGAGGgtaatatatccatatccaaccatgtttcagtttgcttactctgtgtaatggatctactgtttatcgggtgaaaacatcgatgtcccag

upper sequence: AT1G32790.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G161649_T01 (Zea mays), 5'ss of exon 2
GTTGTTGACTGTCGCATATGCGGTGACCCAAACTCGGTCCTTCGGTTTGCATTCATAGAGTTCACTGATGAAGgtattatttcattttctcggttctggagtatcatcagtgtactacagtggttaaatgtcttgtggttttgttttcag---------------
||||| ||||||||||| || || ||||||||||  |||||||||||  | |||||||||||||||||||| |||| ||| ||  | ||      |  || |   ||  |  ||||        | ||| |  |||   || | |                    
GTTGTGGACTGTCGCATGTGTGGAGACCCAAACTTAGTCCTTCGGTTCACCTTCATAGAGTTCACTGATGAGGgtaatatatccatatccaa---ccagatttcaatttgcttactttgtgtaatgaatctactgttcattgggtaatgaccatccatgttccag

upper sequence: AT1G32790.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G166091_T01 (Zea mays), 5'ss of exon 6
GTTGTTGACTGTCGCATATGCGGTGACCCAAACTCGGTCCTTCGGTTTGCATTCATAGAGTTCACTGATGAAGgtattatttcattttct--cggttctggagtatcatcagtgtactacagtggttaaatgtcttgtggttttgttttcag-----------
||||| ||||||||||| || || |||||||| || |||||| ||||||| |||||||||||| ||||||| |||| ||| ||  | ||   |  |  |  ||| |  | | | |  |  | ||| |  |    || | |  |      ||            
GTTGTGGACTGTCGCATGTGTGGGGACCCAAATTCAGTCCTTAGGTTTGCTTTCATAGAGTTCGCTGATGAGGgtaatatatccatatccaaccatgtttcagtttgcttactctg-tgtaatggatctactgtttatcgggtgaaaaacatcgatgtcccag

upper sequence: AT1G32790.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G398795_T01 (Zea mays), 5'ss of exon 6
GTTGTTGACTGTCGCATATGCGGTGACCCAAACTCGGTCCTTCGGTTTGCATTCATAGAGTTCACTGATGAAGgtattatttcattttctcggttctggagtatcatcagtgtactacagtggttaaatgtcttgtggttttgttttcag
||||| ||||||| ||| || || |||||||| |  |||||| ||||||| |||||||||||||||||||| |||| ||| ||  | || |     ||    |                                               
GTTGTGGACTGTCACATGTGTGGGGACCCAAATTTAGTCCTTAGgtttgctttcatagagttcactgatgagggtaatatatccatatc-caaccatgtttcag----------------------------------------------

upper sequence: AT1G32790.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G456149_T01 (Zea mays), 5'ss of exon 6
GTTGTTGACTGTCGCATATGCGGTGACCCAAACTCGGTCCTTCGGTTTGCATTCATAGAGTTCACTGATGAAGgtattatttcattttct--cggttctggagtatcatcagtgtactacagtggttaaatgtcttgtggttttgttttcag-----------
||||| |||||||||||  | || |||||||| || |||||| ||||||| ||| |||||||||||||||| |||| ||| ||  | ||   |  |  |  | | |  | | | |  |  | ||| |  |    || | |  |      ||            
GTTGTGGACTGTCGCATGCGTGGGGACCCAAATTCAGTCCTTAGGTTTGCTTTCGTAGAGTTCACTGATGAGGgtaatatatccatatccaacaatgtttcaatttacttactctg-tgtaatggatctactgtttatcgggtgaaaaacatcgatgtcccag

upper sequence: AT1G32790.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: PP1S196_50V6.1 (Physcomitrella patens), 5'ss of exon 5
GTTGTTGACTGTCGCATATGCGGTGACCCAAACTCGGTCCTTCGGTTTGCATTCATAGAGTTCACTGATGAAGgtattatttcattttctcggttctggagtatcatcagtgtactacagtggttaaatgtcttgtggttttgttttcag-----------------------
||||| || || ||  | ||||| ||||||||||| || ||||||||||| ||| | ||||||||||| |||||||    |   |    ||     |      |  ||||  |    ||||   | || | ||||    |   ||||                          
GTTGTAGATTGCCGTGTTTGCGGGGACCCAAACTCTGTGCTTCGGTTTGCTTTCGTGGAGTTCACTGACGAAGgtacagatgtctgccttctcacataatcatttttcagctttgatcagtttctgaaagccttgaaagtcaattttatccatgattctatttcagcggtgta

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124981533|gb|EL054396.1|EL054396
EST:     TGACCCAAACTCGGTCCTTCGGTTTGCATTCATAGAGTTCACTGATGAAG                         AGGGTGCGATGACTGCTCTAAATTTATCGGGGACTATGTTGGGA
genomic: TGACCCAAACTCGGTCCTTCGGTTTGCATTCATAGAGTTCACTGATGAAGgtattatttc ... ttgttttcagAGGGTGCGATGACTGCTCTAAATTTATCGGGGACTATGTTGGGA
EST: gi|86051671|gb|DR347426.1|DR347426
EST:     TGACCCAAACTCGGTCCTTCGGTTTGCATTCATAGAGTTCACTGATGAAG                         AGGGTGCGATGACTGCTCTAAATTTATCGGGGACTATGTTGGGATTCTATC
genomic: TGACCCAAACTCGGTCCTTCGGTTTGCATTCATAGAGTTCACTGATGAAGgtattatttc ... ttgttttcagAGGGTGCGATGACTGCTCTAAATTTATCGGGGACTATGTTGGGATTCTATC
EST: gi|86081011|gb|DR376768.1|DR376768
EST:     TCACTGATGAAG                         A-GGTGCGATGACTGCTCTAAATTTATCGGGGACTATGTTGGGATTCTATC
genomic: TCACTGATGAAGgtattatttc ... ttgttttcagAGGGTGCGATGACTGCTCTAAATTTATCGGGGACTATGTTGGGATTCTATC
EST: gi|164195675|gb|ES002040.1|ES002040
EST:     CGGTCCTTCGGTTTGCATTCATAGAGTTCACTGATGAAG                         AGGGTGCGATGACTGCTCTAAATTTATCGGGGACTATGTTGGGATTCTATC
genomic: CGGTCCTTCGGTTTGCATTCATAGAGTTCACTGATGAAGgtattatttc ... ttgttttcagAGGGTGCGATGACTGCTCTAAATTTATCGGGGACTATGTTGGGATTCTATC