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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGATTTGGTGAAGTGTGTGGTTATTGATGGTGGAGAGCTTCAATCTAGACGTCACTTGAATGTTCGAGGAAAGAGTGCGACTCTTCCATCCATTACAGgttgataccagctgatgtttttccaatatcttgcatcaaggagcttttctaataaaatgtttttgagtggttatattctggttttaactccacgcag

Basic information

species Arabidopsis thaliana
transcript AT1G32440.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G32440.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv02s0012g01170.t01 (Vitis vinifera), 5'ss of exon 4
AGTGATTTGGTGAAGTGTGTGGTTATTGATGGTGGAGAGCTTCAATCTAGACGTCACTTGAATGTTCGAGGAAAGAGTGCGACTCTTCCATCCATTACAGgttgataccag--ctgatgtttttcc-aatatcttgcatcaaggagct-tttctaataaaatgtttttgagtggttatattctggttttaactccacgcag------------------------------------------------------------
|  |||||||| |||||    || ||||||||||| |||||  |||| || |||||||||||||| || ||||| ||||| ||||| || || || |||||||       |  || |||||||| | ||||  |    |   |   || |||   |  || |   | ||| || || | ||    || |   || ||  |                                                             
AAGGATTTGGTTAAGTGCCAAGTAATTGATGGTGGTGAGCTGAAATCAAGGCGTCACTTGAATGTGCGTGGAAAAAGTGCAACTCTGCCTTCAATAACAGgttatcttttgttcttatgttttttctaataggtgattttctgtttctattttccacgaagttgatatga-tgtttcttttacttttatttgtctacttacgtgttatttgaattgtaaaaaatatccaatcttttcccattactcatgtcatttcaacag