1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TACTCTCTTCTTCTGATCTTGTTGATCTTGGTGGAGCTTGGATTCGCAGCATTTATTTTCTTCGATAACAGCTGGAGAGATgtgagttatcttctttttttgtctgtttccctcttgggttagacttcatgttgccttataacttgacatgatctgcagacaggactgcacaagtacttagctaaccgttttgtattattgttctctag
species | Arabidopsis thaliana |
transcript | AT1G32400.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCGACAACAGCTGGAGAGAT GAACTTCCTTCTGACAGGACTGGAAACTTCGATACGATATATAATTTCCTTEST: gi|116422549|gb|EG465141.1|EG465141
genomic: TCGATAACAGCTGGAGAGATgtgagttatc ... tgttctctagGAACTTCCTTCTGACAGGACTGGAAACTTCGATACGATATATAATTTCCTT
EST: TGGAGCTTGGATTCCCAGCATTTATTTTCTTCGATAACAGCTGGAGAGAT GAACTTCCTTCTGACAGGACTGGAAACTTCGATACGATATATAATTTCCTTEST: gi|124935113|gb|EL012125.1|EL012125
genomic: TGGAGCTTGGATTCGCAGCATTTATTTTCTTCGATAACAGCTGGAGAGATgtgagttatc ... tgttctctagGAACTTCCTTCTGACAGGACTGGAAACTTCGATACGATATATAATTTCCTT
EST: TCGCAGCATTTATTTTCTTCGATAACAGCTGGAGAGAT GAACTTCCTTCTGACAGGACTGGAAACTTCGATACGATATATAATTTCCTTEST: gi|116457758|gb|EG500350.1|EG500350
genomic: TCGCAGCATTTATTTTCTTCGATAACAGCTGGAGAGATgtgagttatc ... tgttctctagGAACTTCCTTCTGACAGGACTGGAAACTTCGATACGATATATAATTTCCTT
EST: TGGAGCTTGGATTCGCAGCATTTATTTTCTTCGATAACAGCTGGAGAGAT GAACTTCCTTCTGACAGGACTGGAAACTTCGATACGATATATAATTTCCTTEST: gi|125167021|gb|EL192535.1|EL192535
genomic: TGGAGCTTGGATTCGCAGCATTTATTTTCTTCGATAACAGCTGGAGAGATgtgagttatc ... tgttctctagGAACTTCCTTCTGACAGGACTGGAAACTTCGATACGATATATAATTTCCTT
EST: GGAGGCTTGGATTCGCAGCATTTATTTTCTTCGATAACAGCTGGAGAGAT GAACTTCCTTCTGACAGGACTGGAAACTTCGATACGATATAEST: gi|124704239|gb|EH795641.1|EH795641
genomic: GGA-GCTTGGATTCGCAGCATTTATTTTCTTCGATAACAGCTGGAGAGATgtgagttatc ... tgttctctagGAACTTCCTTCTGACAGGACTGGAAACTTCGATACGATATA
EST: TGGATTCGCAGCATTTATTTTCTTCGATAACAGCTGGAGAGAT GAACTTCCTTCTGACAGGACTGGAAACTTCGATACGATATATEST: gi|116422550|gb|EG465142.1|EG465142
genomic: TGGATTCGCAGCATTTATTTTCTTCGATAACAGCTGGAGAGATgtgagttatc ... tgttctctagGAACTTCCTTCTGACAGGACTGGAAACTTCGATACGATATAT
EST: TGGAGCTTGGATTCCCAGCATTTATTTTCTTCGATAACAGCTGGAGAGAT GAACTTCCTTCTGACAGGACTGGAAACTTCGATACGATATATAATTTCCTT
genomic: TGGAGCTTGGATTCGCAGCATTTATTTTCTTCGATAACAGCTGGAGAGATgtgagttatc ... tgttctctagGAACTTCCTTCTGACAGGACTGGAAACTTCGATACGATATATAATTTCCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACTCTCTTCTTCTGATCTTGTTGATCTTGGTGGAGCTTGGATTCGCAGCATTTATTTTCTTCGATAACAGCTGGAGAGATgtgagttatcttctttttttgtctgtttccctcttgggttagacttcatgttgccttataacttgacatgatctgcagacaggactgcacaagtacttagctaaccgttttgtattattgttctctag
- - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA