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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAAAGTTTTCCATCCGATAATCTGCTGCGCGCTATCTGCAGTACTTGCTGCTCTAGCTTTTGGGTATGCTTCAGGATCTGGACTTGATCCTGTTTTAGgtaaagttaccttcactatgaaagaaactatagagaaacccttttttgacctaaaacagaaagtaaaagcattttgttaactgctctttaatggtgacag

Basic information

species Arabidopsis thaliana
transcript AT1G32080.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125324864|gb|EL338944.1|EL338944
EST:     TGCTCTAGCTTTTGGGTATGCTTCAGGATCTGGACTTGATCCTGTTCTAG                         GAAACTACCTTACCAAA
genomic: TGCTCTAGCTTTTGGGTATGCTTCAGGATCTGGACTTGATCCTGTTTTAGgtaaagttac ... atggtgacagGAAACTACCTTACCAAA
EST: gi|124887062|gb|EH965964.1|EH965964
EST:     TGGGTATGCTTCAGGATCTGGACTTGGTCCTG-TTTAG                         GAAACTACCTTACCAAAGTAGCATCAGATCCTGGTGCTGGTGACATCTTAA
genomic: TGGGTATGCTTCAGGATCTGGACTTGATCCTGTTTTAGgtaaagttac ... atggtgacagGAAACTACCTTACCAAAGTAGCATCAGATCCTGGTGCTGGTGACATCTTAA
EST: gi|124814890|gb|EH899756.1|EH899756
EST:     CTTTTGGGTTATGCTTCAGGATCTGGACTTGATCCTGTTTTAG                         GAAACTACCTTACCAAAGTAGCATCAGATCCTGGTGCTGGTGACATCTTA
genomic: CTTTTGGG-TATGCTTCAGGATCTGGACTTGATCCTGTTTTAGgtaaagttac ... atggtgacagGAAACTACCTTACCAAAGTAGCATCAGATCCTGGTGCTGGTGACATCTTA
EST: gi|125027390|gb|EL099659.1|EL099659
EST:     TTTTGGGTATGCTTCAGGATCTGGACTTGATCCTGTTTTAG                         GAAACTACCTTACCAAAGTAGCATCAGATCCTGGTGCTGGTGACATCTTAA
genomic: TTTTGGGTATGCTTCAGGATCTGGACTTGATCCTGTTTTAGgtaaagttac ... atggtgacagGAAACTACCTTACCAAAGTAGCATCAGATCCTGGTGCTGGTGACATCTTAA
EST: gi|124897315|gb|EH973529.1|EH973529
EST:     TGCTCTAGCTTTTGGGTATGCTTCAGGATCTGGACTTGATCCTGTTTTAG                         GAAACTACCTTA
genomic: TGCTCTAGCTTTTGGGTATGCTTCAGGATCTGGACTTGATCCTGTTTTAGgtaaagttac ... atggtgacagGAAACTACCTTA
EST: gi|124957002|gb|EL031875.1|EL031875
EST:     TGCTCTAGCTTTTGGGTATGCTTCAGGATCTGGACTTGATCCTGTTTTAG                         GAA-CTACCTTACCAAAGTAGCATCAGATCCTGGTG
genomic: TGCTCTAGCTTTTGGGTATGCTTCAGGATCTGGACTTGATCCTGTTTTAGgtaaagttac ... atggtgacagGAAACTACCTTACCAAAGTAGCATCAGATCCTGGTG