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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATCTTACTTATCACAAAATAATGGGACCTTTACCTCCTGATATTGGAAAGTTGGACCATTTAAGGCTTTTgtatgtgctctctagccttattcatttttattgcttaagagagtacttcgattctgatcatctgtgtgtcattgcag

Basic information

species Arabidopsis thaliana
transcript AT1G31420.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116452754|gb|EG495346.1|EG495346
EST:     ATGGGACCTTTACCTCCCGATATTGGAAAGTTGGACCATTTAAGGCTTTT                         AATGCTTCACAACAATGCTTTATATGGAGCAATACCTACAGCATTGGGAAA
genomic: ATGGGACCTTTACCTCCTGATATTGGAAAGTTGGACCATTTAAGGCTTTTgtatgtgctc ... gtcattgcagAATGCTTCACAACAATGCTTTATATGGAGCAATACCTACAGCATTGGGAAA
EST: gi|116419338|gb|EG461930.1|EG461930
EST:     ATGGGACCTTTACCTCCTGATATTGGAAAGTTGGACCATTTAAGGCTTTT                         AATGCTTCACAACAATGCTTTATATGGAGCAATACCTACAGCATTGGGAAA
genomic: ATGGGACCTTTACCTCCTGATATTGGAAAGTTGGACCATTTAAGGCTTTTgtatgtgctc ... gtcattgcagAATGCTTCACAACAATGCTTTATATGGAGCAATACCTACAGCATTGGGAAA