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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTCCTGCTCTCAAGATGGGTACAATGATGGGAGTTTTCGTTCCCTGCTTGCAAAACATATTAGGAATTATATATTATATCCGTTTCACATGgtaagactgcaaagtccttgatgtttgacaaaagactgcaaaatcatcatggcctactttaatctgttcaatattcag

Basic information

species Arabidopsis thaliana
transcript AT1G30450.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G30450.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os08g23440.1 (Oryza sativa), 5'ss of exon 5
CCTCCTGCTCTCAAGATGGGTACAATGATGGGAGTTTTCGTTCCCTGCTTGCAAAACATATTAGGAATTATATATTATATCCGTTTCACATGgtaaga----ctgcaaagt---ccttgatgtttgacaaaag----actgcaaaatcatcatggcctactttaatctgttcaatattcag-----------
    |||  | |||| | ||||| |||||||| || || || || |||||||| || ||||| ||||| || |||||||||||||| ||||||||| |    ||| | | |     || |  |   | |   |      | ||||  | | ||    |  | | || | ||   |  |  |           
GAAACTGGACCCAAGTTTGGTACCATGATGGGTGTCTTTGTCCCATGCTTGCAGAATATATTGGGAATCATTTATTATATCCGTTTTACATGgtaaaatattctggatactttattttaacttcccatatttgttttgttccaaagcccttattattttttatgatttttttgttcctgtgcttgtcaatgt

upper sequence: AT1G30450.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G432083_T01 (Zea mays), 5'ss of exon 2
CCTCCTGCTCTCAAGATGGGTACAATGATGGGAGTTTTCGTTCCCTGCTTGCAAAACATATTAGGAATTATATATTATATCCGTTTCACATGgtaag--actgcaaagtccttgatgtttgacaaaagactgcaaaatcatc-atggcctactttaatctgttcaatattcag--------------------
     ||  |  ||| | || || |||||||| || || ||||| |||||||| ||||| || ||||| || |||||||||||||| || |||||||  | |||| |  | ||  | | || |   | ||         ||   |    | ||   |    | || |  |||                     
GAAAGTGGACCTAAGTTCGGCACCATGATGGGTGTCTTTGTTCCATGCTTGCAGAACATCTTGGGAATCATTTATTATATCCGTTTTACCTGgtaaggtattgcatacacttttgt-tatggcctcatacattgtttctatttgttattttctgagaatgctccactgctcatacagatgttgtttcccttct

upper sequence: AT1G30450.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv10s0003g04530.t01 (Vitis vinifera), 5'ss of exon 4
CCTCCTGCTCTCAAGATGGGTACAATGATGGGAGTTTTCGTTCCCTGCTTGCAAAACATATTAGGAATTATATATTATATCCGTTTCACATGgtaagact-----gcaaagtccttgatgtttgacaaaagactgcaaaat---catcatggcctacttta-atctgttcaatattcag-------------
 ||  || ||||||  | || ||| |||||||||| || || || |||||||||||||| ||||||||||| || ||||| || ||  | ||||||  ||     ||    | |||  |  |||| |  |   |      |   ||| |  |   ||   | || ||| ||||| | |              
GCTAATGATCTCAAATTAGGGACATTGATGGGAGTATTTGTGCCGTGCTTGCAAAACATTTTAGGAATTATCTACTATATACGATTTTCTTGgtaaatctcatttgcctgatgcttttttgttgaaattaatttcttttgtttacattactgtgcacaagacatttgtacaatacttaataataatatttag