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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATCTGAAACTTGCAGAAGATTTAGCGAAAACATGCTTTGAGATGTATGAAGTAACTGCCACTGGCCTTGCTCCAGAAATTGCTTACTTTCACACAAAGgtaagttttgtgtgtacttttttccaaaacgttattgtcatccttgctcttcttgttttttgttaagtcttggattttaataaagcag

Basic information

species Arabidopsis thaliana
transcript AT1G30000.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G30000.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA13G28910.1 (Glycine max), 5'ss of exon 4
AAATCTGAAACTTGCAGAAGATTTAGCGAAAACATGCTTTGAGATGTATGAAGTAACTGCCACTGGCCTTGCTCCAGAAATTGCTTACTTTCACACAAAGgtaagtt--ttgtgtgtacttttttccaaaacgttattgtcatccttgctcttcttgttttttgttaa---gtcttggattttaataaagcag--------
|||| |||| || ||||||||| |  | |||||||||||||| ||||||| ||||||| | ||||| |||||||| ||||||||||||||||| ||  |||| |||   || | | |    ||||  |   | | | | | ||    | | |        |     ||    |||     | || ||| |           
AAATTTGAAGCTAGCAGAAGATCTGACTAAAACATGCTTTGAAATGTATGCAGTAACTTCAACTGGTCTTGCTCCTGAAATTGCTTACTTTCATACTGAGgttagtagattttttatggcattttggatttcatcaat-tgataaaagatttcaaaaaaatgcagcaatgcatctcattatctactaatgtcctcccattt

upper sequence: AT1G30000.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA15G10130.1 (Glycine max), 5'ss of exon 4
AAATCTGAAACTTGCAGAAGATTTAGCGAAAACATGCTTTGAGATGTATGAAGTAACTGCCACTGGCCTTGCTCCAGAAATTGCTTACTTTCACACAAAGgtaagttt-tgtgtgtacttttttccaaaacgttattgtcatccttgctcttcttgttttttgttaagtcttggattttaataaagcag------------
|||| |||| || ||||||||| |  | |||||||||||||| ||||||| ||||||| | ||||| |||||||| ||||||||||||||||| ||  |||| |||   | | | |    ||||  |   | | | | | ||    | ||           |   || |   | | |  |    |  |             
AAATTTGAAGCTAGCAGAAGATCTGACTAAAACATGCTTTGAAATGTATGCAGTAACTTCAACTGGTCTTGCTCCTGAAATTGCTTACTTTCATACTGAGgttagtggatttttatggcattttggatttcatcaat-tgataaaagatcacaaaaaaaaataaaaaatgcagcaatgcatctcattatctactaatgtcc

upper sequence: AT1G30000.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv10s0003g03280.t01 (Vitis vinifera), 5'ss of exon 4
AAATCTGAAACTTGCAGAAGATTTAGCGAAAACATGCTTTGAGATGTATGAAGTAACTGCCACTGGCCTTGCTCCAGAAATTGCTTACTTTCACACAAAGgtaagttttgtgtgtacttttttccaaaacgttattgtcatccttgctcttcttgttttttgttaagtcttggattttaataaagcag-------------------------------------------------------------
|||| |||| ||||||||||||||||| || ||||||||||||||||||  ||| ||| | ||||| ||||||||||||||||||||||| |||||| ||||  |||     | | |      | |  || |||||     |  |   | | | | |  |  | ||    |||||  | ||  | ||                                                              
AAATTTGAAGCTTGCAGAAGATTTAGCTAAGACATGCTTTGAGATGTATTCAGTGACTTCTACTGGGCTTGCTCCAGAAATTGCTTACTTCCACACAGAGgttggttggacatat-caaaacactattacattattacatacagtaaacatatggatggtgctgaaa---tggatcattatctaccattttattttgctgccactaaaaactgttaaagagatttgacatctggttccaattgacgcag