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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTGTAACGCTGTTGCGGTTGCTGCTCTGCTCAACGCGACTCTAGTTCTTCCTCGGTTTCTTTACAGCAATGTATGGAAAGATCCTAGgtattttaaactcctcaagactttcaaaatttattataaaaaaaatttgtttgttgattttgcgaaagtgcgtaaatggcag

Basic information

species Arabidopsis thaliana
transcript AT1G29200.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G29200.3 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA13G30070.1 (Glycine max), 5'ss of exon 4
ATCTGTAACGCTGTTGCGGTTGCTGCTCTGCTCAACGCGACTCTAGTTCTTCCTCGGTTTCTTTACAGCAATGTATGGAAAGATCCTAGgtattttaaactc----ctcaag-actttcaaaatttatta--taaaaaaaatttgtttg-------ttgattttgcgaaagtgcgtaaatggcag----
|| || || |||||||| || ||  |||| || || || ||  ||||| ||||   ||||||||||||||| |||||||| ||||| ||||||  |    ||    || ||| | |  |  || || | |  || | |    ||||||        || ||   |  |||||    |  ||        
ATTTGCAATGCTGTTGCTGTGGCATCTCTCCTTAATGCAACCTTAGTTATTCCAAAGTTTCTTTACAGCAACGTATGGAAGGATCCAAGgtatgatgtgttcagtactaaagtagtaactgaacttttcacttatacaggtcttgttttacttctttttatacagtaaaagttttcatctgttcaccag

upper sequence: AT1G29200.3 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv10s0003g01470.t01 (Vitis vinifera), 5'ss of exon 5
ATCTGTAACGCTGTTGCGGTTGCTGCTCTGCTCAACGCGACTCTAGTTCTTCCTCGGTTTCTTTACAGCAATGTATGGAAAGATCCTAGgt---attttaaactcctcaagactttcaaaatttattataaaaaaaatttgtttgttgattttgcgaaagtgc--gtaaatggcag-------------
|| || || |||||||| || ||| |||| || || || ||||||||||| ||    ||||||||||||||||| ||||| ||||||||||   ||||    |        |||   | |  || || |||| |   ||| ||| ||  ||||       |    ||   |||                
ATTTGCAATGCTGTTGCTGTGGCTTCTCTTCTTAATGCTACTCTAGTTCTCCCCAAATTTCTTTACAGCAATGTGTGGAAGGATCCTAGgtctgatttcgtgccttatgttactcctacatattgttttaaacagttttttttttttttttttttttttttttcagtttttggtgtatggttttgggat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116409003|gb|EG451595.1|EG451595
EST:     ACTCTAGTTCTTCCTCGGTTTCTTTACAGCAATGTATGGAAAGATCCTAG                         CCAATTTGGTGATATATACCAAGAGGATCATTTTATCGAGTATCTGAAAGA
genomic: ACTCTAGTTCTTCCTCGGTTTCTTTACAGCAATGTATGGAAAGATCCTAGgtattttaaa ... taaatggcagCCAATTTGGTGATATATACCAAGAGGATCATTTTATCGAGTATCTGAAAGA
EST: gi|116409041|gb|EG451633.1|EG451633
EST:     ACTCTAGTTCTTCCTCGGTTTCTTTACAGCAATGTATGGAAAGATCCTAG                         CCAATTTGGTGATATATACCAAGAGGATCATTTTATCGAGTATCTGAAAGA
genomic: ACTCTAGTTCTTCCTCGGTTTCTTTACAGCAATGTATGGAAAGATCCTAGgtattttaaa ... taaatggcagCCAATTTGGTGATATATACCAAGAGGATCATTTTATCGAGTATCTGAAAGA
EST: gi|116409042|gb|EG451634.1|EG451634
EST:     ACTCTAGTTCTTCCTCGGTTTCTTTACAGCAATGTATGGAAAGATCCTAG                         CCAATTTGGTGATATATACCAAGAGGATCATTTTATCGAGTATCTGAAAGA
genomic: ACTCTAGTTCTTCCTCGGTTTCTTTACAGCAATGTATGGAAAGATCCTAGgtattttaaa ... taaatggcagCCAATTTGGTGATATATACCAAGAGGATCATTTTATCGAGTATCTGAAAGA
EST: gi|116408977|gb|EG451569.1|EG451569
EST:     ACTCTAGTTCTTCCTCGGTTTCTTTACAGCAATGTATGGAAAGATCCTAG                         CCAATTTGGTGATATATACCAAGAGGATCATTTTATCGAGTATCTGAAAGA
genomic: ACTCTAGTTCTTCCTCGGTTTCTTTACAGCAATGTATGGAAAGATCCTAGgtattttaaa ... taaatggcagCCAATTTGGTGATATATACCAAGAGGATCATTTTATCGAGTATCTGAAAGA
EST: gi|116408966|gb|EG451558.1|EG451558
EST:     ACTCTAGTTCTTCCTCGGTTTCTTTACAGCAATGTATGGAAAGATCCTAG                         CCAATTTGGTGATATATACCAAGAGGATCATTTTATCGAGTATCTGAAAGA
genomic: ACTCTAGTTCTTCCTCGGTTTCTTTACAGCAATGTATGGAAAGATCCTAGgtattttaaa ... taaatggcagCCAATTTGGTGATATATACCAAGAGGATCATTTTATCGAGTATCTGAAAGA
EST: gi|116408964|gb|EG451556.1|EG451556
EST:     ACTCTAGTTCTTCCTCGGTTTCTTTACAGCAATGTATGAAAAGATCCTAG                         CCAATTTGGTGATATATACCAAGAGGATCATTTTATCGAGTATCTGAAAGA
genomic: ACTCTAGTTCTTCCTCGGTTTCTTTACAGCAATGTATGGAAAGATCCTAGgtattttaaa ... taaatggcagCCAATTTGGTGATATATACCAAGAGGATCATTTTATCGAGTATCTGAAAGA
EST: gi|116408807|gb|EG451399.1|EG451399
EST:     ACTCTAGTTCTTCCTCGGTTTCTTTACAGCAATGTATGGAAAGATCCTAG                         CCAATTTGGTGATATATACCAAGAGGATCATTTTATCGAGTATCTGAAAGA
genomic: ACTCTAGTTCTTCCTCGGTTTCTTTACAGCAATGTATGGAAAGATCCTAGgtattttaaa ... taaatggcagCCAATTTGGTGATATATACCAAGAGGATCATTTTATCGAGTATCTGAAAGA
EST: gi|116409036|gb|EG451628.1|EG451628
EST:     ACTCTAGTTCTTCCTCGGTTTCTTTACAGCAATGTATGGAAAGATCCTAG                         CCAATTTGGTGATATATACCAAGAGGATCATTTTATCGAGTATCTGAAAGA
genomic: ACTCTAGTTCTTCCTCGGTTTCTTTACAGCAATGTATGGAAAGATCCTAGgtattttaaa ... taaatggcagCCAATTTGGTGATATATACCAAGAGGATCATTTTATCGAGTATCTGAAAGA
EST: gi|116409002|gb|EG451594.1|EG451594
EST:     ACTCTAGTTCTTCCTCGGTTTCTTTACAGCAATGTATGGAAAGATCCTAG                         CCAATTTGGTGATATATACCAAGAGGATCATTTTATCGAGTATCTGAAAGA
genomic: ACTCTAGTTCTTCCTCGGTTTCTTTACAGCAATGTATGGAAAGATCCTAGgtattttaaa ... taaatggcagCCAATTTGGTGATATATACCAAGAGGATCATTTTATCGAGTATCTGAAAGA
EST: gi|116409038|gb|EG451630.1|EG451630
EST:     ACTCTAGTTCTTCCTCGGTTTCTTTACAGCAATGTATGGAAAGATCCTAG                         CCAATTTGGTGATATATACCAAGAGGATCATTTTATCGAGTATCTGAAAGA
genomic: ACTCTAGTTCTTCCTCGGTTTCTTTACAGCAATGTATGGAAAGATCCTAGgtattttaaa ... taaatggcagCCAATTTGGTGATATATACCAAGAGGATCATTTTATCGAGTATCTGAAAGA
EST: gi|116409043|gb|EG451635.1|EG451635
EST:     ACTCTAGTTCTTCCTCGGTTTCTTTACAGCAATGTATGGAAAGATCCTAG                         CCAATTTGGTGATATATACCAAGAGGATCATTTTATCGAGTATCTGAAAGA
genomic: ACTCTAGTTCTTCCTCGGTTTCTTTACAGCAATGTATGGAAAGATCCTAGgtattttaaa ... taaatggcagCCAATTTGGTGATATATACCAAGAGGATCATTTTATCGAGTATCTGAAAGA
EST: gi|116408965|gb|EG451557.1|EG451557
EST:     ACTCTAGTTCTTCCTCGGTTTCTTTACAGCAATGTATGGAAAGATCCTAG                         CCAATTTGGTGATATATACCAAGAGGATCATTTTATCGAGTATCTGAAAGA
genomic: ACTCTAGTTCTTCCTCGGTTTCTTTACAGCAATGTATGGAAAGATCCTAGgtattttaaa ... taaatggcagCCAATTTGGTGATATATACCAAGAGGATCATTTTATCGAGTATCTGAAAGA
EST: gi|116408817|gb|EG451409.1|EG451409
EST:     ACTCTAGTTCTTCCTCGGTTTCTTTACAGCAATGTATGGAAAGATCCTAG                         CCAATTTGGTGATATATACCAAGAGGATCATTTTATCGAGTATCTGAAAGA
genomic: ACTCTAGTTCTTCCTCGGTTTCTTTACAGCAATGTATGGAAAGATCCTAGgtattttaaa ... taaatggcagCCAATTTGGTGATATATACCAAGAGGATCATTTTATCGAGTATCTGAAAGA
EST: gi|116408815|gb|EG451407.1|EG451407
EST:     ACTCTAGTTCTTCCTCGGTTTCTTTACAGCAATGTATGGAAAGATCCTAG                         CCAATTTGGTGATATATACCAAGAGGATCATTTTATCGAGTATCTGAAAGA
genomic: ACTCTAGTTCTTCCTCGGTTTCTTTACAGCAATGTATGGAAAGATCCTAGgtattttaaa ... taaatggcagCCAATTTGGTGATATATACCAAGAGGATCATTTTATCGAGTATCTGAAAGA
EST: gi|116409037|gb|EG451629.1|EG451629
EST:     ACTCTAGTTCTTCCTCGGTTTCTTTACAGCAATGTATGGAAAGATCCTAG                         CCAATTTGGTGATATATACCAAGAGGATCATTTTATCGAGTATCTGAAAGA
genomic: ACTCTAGTTCTTCCTCGGTTTCTTTACAGCAATGTATGGAAAGATCCTAGgtattttaaa ... taaatggcagCCAATTTGGTGATATATACCAAGAGGATCATTTTATCGAGTATCTGAAAGA