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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAAGAGGATCATTTTATCGAGTATCTGAAAGATGAGGTGAATATAGTGAAGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTGgtgtgtttttgaactcccttttttccttgtccggtctaatttattggagatgcaaaattcataatgtttgtttttctacatag

Basic information

species Arabidopsis thaliana
transcript AT1G29200.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116409003|gb|EG451595.1|EG451595
EST:     AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTG                         GTTACTGATACGGAGTTTGTAAAAGAGGCAACACCAGTCGATTACATCGAA
genomic: AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTGgtgtgttttt ... ttctacatagGTTACTGATACGGAGCTTGTAAAAGAGGCAACACCAGTCGATTACATCGAA
EST: gi|116409042|gb|EG451634.1|EG451634
EST:     AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTG                         GTTACTGATACGGAGCTTGTAAAAGAGGCAACACCAGTCGATTACATCGAA
genomic: AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTGgtgtgttttt ... ttctacatagGTTACTGATACGGAGCTTGTAAAAGAGGCAACACCAGTCGATTACATCGAA
EST: gi|116408977|gb|EG451569.1|EG451569
EST:     AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTG                         GTTACTGATACGGAGCTTGTAAAAGAGGCAACACCAGTCGATTACATCGAA
genomic: AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTGgtgtgttttt ... ttctacatagGTTACTGATACGGAGCTTGTAAAAGAGGCAACACCAGTCGATTACATCGAA
EST: gi|116408966|gb|EG451558.1|EG451558
EST:     AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTG                         GTTACTGATACGGAGCTTGTAAAAGAGGCAACACCAGTCGATTACATCGAA
genomic: AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTGgtgtgttttt ... ttctacatagGTTACTGATACGGAGCTTGTAAAAGAGGCAACACCAGTCGATTACATCGAA
EST: gi|116408813|gb|EG451405.1|EG451405
EST:     AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTG                         GTTACTGATACGGAGCTTGTAAAAGAGGCAACACCAGTCGATTACATCGAA
genomic: AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTGgtgtgttttt ... ttctacatagGTTACTGATACGGAGCTTGTAAAAGAGGCAACACCAGTCGATTACATCGAA
EST: gi|116408964|gb|EG451556.1|EG451556
EST:     AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTG                         GTTACTGATACGGAGCCTGTAAAAGAGGCAACACCAGTCGATTACATCGAA
genomic: AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTGgtgtgttttt ... ttctacatagGTTACTGATACGGAGCTTGTAAAAGAGGCAACACCAGTCGATTACATCGAA
EST: gi|116408807|gb|EG451399.1|EG451399
EST:     AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTG                         GTTACTGATACGGAGCTTGTAAAAGAGGCAACACCAGTCGATTACATCGAA
genomic: AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTGgtgtgttttt ... ttctacatagGTTACTGATACGGAGCTTGTAAAAGAGGCAACACCAGTCGATTACATCGAA
EST: gi|116409036|gb|EG451628.1|EG451628
EST:     AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTG                         GTTACTGATACGGAGCTTGTAAAAGAGGCAACACCAGTCGATTACATCGAA
genomic: AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTGgtgtgttttt ... ttctacatagGTTACTGATACGGAGCTTGTAAAAGAGGCAACACCAGTCGATTACATCGAA
EST: gi|116408811|gb|EG451403.1|EG451403
EST:     AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTG                         GTTACTGATACGGAGCTTGTAAAAGAGGCAACACCAGTCGATTACATCGAA
genomic: AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTGgtgtgttttt ... ttctacatagGTTACTGATACGGAGCTTGTAAAAGAGGCAACACCAGTCGATTACATCGAA
EST: gi|116409002|gb|EG451594.1|EG451594
EST:     AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTG                         GTTACTGATACGGAGTTTGTAAAAGAGGCAACACCAGTCGATTACATCGAA
genomic: AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTGgtgtgttttt ... ttctacatagGTTACTGATACGGAGCTTGTAAAAGAGGCAACACCAGTCGATTACATCGAA
EST: gi|116409038|gb|EG451630.1|EG451630
EST:     AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTG                         GTTACTGATACGGAGCTTGTAAAAGAGGCAACACCAGTCGATTACATCGAA
genomic: AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTGgtgtgttttt ... ttctacatagGTTACTGATACGGAGCTTGTAAAAGAGGCAACACCAGTCGATTACATCGAA
EST: gi|116409043|gb|EG451635.1|EG451635
EST:     AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTG                         GTTACTGATACGGAGCTTGTAAAAGAGGCAACACCAGTCGATTACATCGAA
genomic: AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTGgtgtgttttt ... ttctacatagGTTACTGATACGGAGCTTGTAAAAGAGGCAACACCAGTCGATTACATCGAA
EST: gi|116408965|gb|EG451557.1|EG451557
EST:     AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTG                         GTTACTGATACGGAGTTTGTAAAAGAGGCAACACCAGTCGATTACATCGAA
genomic: AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTGgtgtgttttt ... ttctacatagGTTACTGATACGGAGCTTGTAAAAGAGGCAACACCAGTCGATTACATCGAA
EST: gi|116408810|gb|EG451402.1|EG451402
EST:     AGAATCTTCCTCA-CATCTAAA-TCTACTGATA-CA-GA-TCTCAGCTTG                         GTTACTGATACGGAGCTTGTAAA
genomic: AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTGgtgtgttttt ... ttctacatagGTTACTGATACGGAGCTTGTAAA
EST: gi|116409037|gb|EG451629.1|EG451629
EST:     AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTG                         GTTACTGATACGGAGCTTGTAAAAGAGGCAACACCAGTCGATTACATCGAA
genomic: AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTGgtgtgttttt ... ttctacatagGTTACTGATACGGAGCTTGTAAAAGAGGCAACACCAGTCGATTACATCGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCAAGAGGATCATTTTATCGAGTATCTGAAAGATGAGGTGAATATAGTGAAGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTGgtgtgtttttgaactcccttttttccttgtccggtctaatttattggagatgcaaaattcataatgtttgtttttctacatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT