1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TCAGGCAAAGAACAGGCATTCGAACGGACAAGGTCGCTGGCCTGCTAAATCTGCTCAATTCGTTCTTGATCTTCTCAAGAATGCTGAGAGCAATGCTGAGgttggttttacgactctttttgttttgttgccatggtgattttagttagttactaaaactttttgtaaaccatttggttatcag
species | Arabidopsis thaliana |
transcript | AT1G27400.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CGTTCTTGATCTTCTCAAGAATGCTGAGAGCAATGCTGAG GTCAAAGGTTTGGATGTCGATGCCCTTTTCATTTCTCACATCCAAGTGAACEST: gi|124866744|gb|EH951181.1|EH951181
genomic: CGTTCTTGATCTTCTCAAGAATGCTGAGAGCAATGCTGAGgttggtttta ... tggttatcagGTCAAAGGTTTGGATGTCGATGCCCTTTTCATTTCTCACATCCAAGTGAAC
EST: CTGCTCAATTCGTTCTTGATCTTCTCAAGAATGCTGAGAGCAATGCTGAG GTCAAAGGTTTGGATGTCGEST: gi|47827860|gb|CK117544.1|CK117544
genomic: CTGCTCAATTCGTTCTTGATCTTCTCAAGAATGCTGAGAGCAATGCTGAGgttggtttta ... tggttatcagGTCAAAGGTTTGGATGTCG
EST: CTGCTCAATTCGTTCTTGATCTTCTCAAGAATGCTGAGAGCAATGCTGAG GTCAAAGGTTTGGATGTCGATGCCCTTTTCATTTCTCACATCCAAGTGAACEST: gi|125263279|gb|EL277364.1|EL277364
genomic: CTGCTCAATTCGTTCTTGATCTTCTCAAGAATGCTGAGAGCAATGCTGAGgttggtttta ... tggttatcagGTCAAAGGTTTGGATGTCGATGCCCTTTTCATTTCTCACATCCAAGTGAAC
EST: CTTCTCAAGAATGCTGAGAGCAATGCTGAG GTCAAAGGTTTGGATGTCGATGCCCTTTTCATTTCTCACATCCAAGTGEST: gi|86074318|gb|DR370075.1|DR370075
genomic: CTTCTCAAGAATGCTGAGAGCAATGCTGAGgttggtttta ... tggttatcagGTCAAAGGTTTGGATGTCGATGCCCTTTTCATTTCTCACATCCAAGTG
EST: CTGCTCAATTCGTTCTTGATCTTCTCAAGAATGCTGAGAGCAATGCTGAG GTCAAAGGTTTGGATGTCGATGCCCTTTTCATTTCTCACATCCAAGTGAACEST: gi|164059501|gb|ES033960.1|ES033960
genomic: CTGCTCAATTCGTTCTTGATCTTCTCAAGAATGCTGAGAGCAATGCTGAGgttggtttta ... tggttatcagGTCAAAGGTTTGGATGTCGATGCCCTTTTCATTTCTCACATCCAAGTGAAC
EST: CTGCTCAATTCGTTCTTGATCTTCTCAAGAATGCTGAGAGCAATGCTGAG GTCAAAGGTTTGGATGTCGATGEST: gi|116444090|gb|EG486682.1|EG486682
genomic: CTGCTCAATTCGTTCTTGATCTTCTCAAGAATGCTGAGAGCAATGCTGAGgttggtttta ... tggttatcagGTCAAAGGTTTGGATGTCGATG
EST: CTGCTCAATTCGTTCTTGATCTTCTCAAGAATGCTGAGAGCAATGCTGAG GTCAAAGGTTTGGATGTCGATGCCCTTTTCATTTCTCACATCCAAGTGAAC
genomic: CTGCTCAATTCGTTCTTGATCTTCTCAAGAATGCTGAGAGCAATGCTGAGgttggtttta ... tggttatcagGTCAAAGGTTTGGATGTCGATGCCCTTTTCATTTCTCACATCCAAGTGAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAGGCAAAGAACAGGCATTCGAACGGACAAGGTCGCTGGCCTGCTAAATCTGCTCAATTCGTTCTTGATCTTCTCAAGAATGCTGAGAGCAATGCTGAGgttggttttacgactctttttgttttgttgccatggtgattttagttagttactaaaactttttgtaaaccatttggttatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG