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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCCGTTTCTACTAGATGACCCAAATGTTGGAATGCTATTTCCAGCTGATGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAGgtatgaccttatgagcccatctataatatgtagattagtgttgacaaacagaacagttagttatattgcctttttctgtttcaatag

Basic information

species Arabidopsis thaliana
transcript AT1G23310.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G23310.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA01G03260.3 (Glycine max), 5'ss of exon 4
GCTCCGTTTCTACTAGATGACCCAAATGTTGGAATGCTATTTCCAGCTGATGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAGgtatgaccttatgagcccatctataatatgtagattagtgttgacaaacagaacagttagttatatt-gcctttttctgtttcaatag------------
||||| || ||||| ||||| || ||||||||| ||||||| || |||||||| ||||||||||||||||| |||||||| ||||| || ||||||||||||||     | | | |   | | |  |||     |      |   | | |      |  ||| ||   |  ||  ||||   |  |||            
GCTCCATTCCTACTTGATGATCCTAATGTTGGACTGCTATTCCCTGCTGATGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGCGGTTTAGgtattcatatgtcaactactttgttttataacattgtagaattttacatattttgatctgttttaaaagtattgctctgcaaccctagtttttatcctat

upper sequence: AT1G23310.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA02G04320.3 (Glycine max), 5'ss of exon 4
GCTCCGTTTCTACTAGATGACCCAAATGTTGGAATGCTATTTCCAGCTGATGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAGgtatgaccttatgagcccatctataatatg-tagattagtgttgacaaacagaacagttagttatatt-gcctttttctgtttcaatag------------
||||| || ||||| ||||| || ||||||||| ||||||| || |||||||| ||||||||||||||||| |||||||| ||||| || || |||||||||||     | | | |   | | |  |||   |   |||  ||   | | |      |  | | ||   |  ||  ||||   |  |||            
GCTCCATTCCTACTTGATGATCCTAATGTTGGACTGCTATTCCCTGCTGATGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAGgtattcatatgtcaactactttgttttataacatggtagaattt-tacatattttgatctgctttaaaagtattgctctgcaaccttagtttttaccctat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86074112|gb|DR369869.1|DR369869
EST:     TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAG                         GTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTG
genomic: TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAGgtatgacctt ... gtttcaatagGTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTG
EST: gi|86074113|gb|DR369870.1|DR369870
EST:     TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAG                         GTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTG
genomic: TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAGgtatgacctt ... gtttcaatagGTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTG
EST: gi|86074142|gb|DR369899.1|DR369899
EST:     TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAG                         GTGCTTACAGTGATTCAAGAGGCCTT
genomic: TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAGgtatgacctt ... gtttcaatagGTGCTTACAGTGATTCAAGAGGCCTT
EST: gi|116482909|gb|EG525501.1|EG525501
EST:     TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAG                         GTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTG
genomic: TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAGgtatgacctt ... gtttcaatagGTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTG
EST: gi|125030518|gb|EL102787.1|EL102787
EST:     TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAG                         GTGCTTACAGTGATTCAAGAGG
genomic: TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAGgtatgacctt ... gtttcaatagGTGCTTACAGTGATTCAAGAGG
EST: gi|86074111|gb|DR369868.1|DR369868
EST:     TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAG                         GTGCTTACAGTGAT
genomic: TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAGgtatgacctt ... gtttcaatagGTGCTTACAGTGAT
EST: gi|86074105|gb|DR369862.1|DR369862
EST:     TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAG                         GTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTG
genomic: TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAGgtatgacctt ... gtttcaatagGTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTG
EST: gi|124846597|gb|EH931034.1|EH931034
EST:     TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAG                         GTGCTTACAGTGATTCAAGNGGCCTTCCAGGAGTTAGGAAAGAGGTTG
genomic: TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAGgtatgacctt ... gtttcaatagGTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTG
EST: gi|116434550|gb|EG477142.1|EG477142
EST:     TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAG                         GTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTG
genomic: TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAGgtatgacctt ... gtttcaatagGTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTG
EST: gi|86074118|gb|DR369875.1|DR369875
EST:     TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAG                         GTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAG
genomic: TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAGgtatgacctt ... gtttcaatagGTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAG
EST: gi|86074145|gb|DR369902.1|DR369902
EST:     TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAG                         GTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAAAGGTTGCTG
genomic: TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAGgtatgacctt ... gtttcaatagGTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTG
EST: gi|125043941|gb|EL116210.1|EL116210
EST:     CTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAG                         GTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGT
genomic: CTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAGgtatgacctt ... gtttcaatagGTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGT
EST: gi|86074138|gb|DR369895.1|DR369895
EST:     TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAG                         GTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTANGAAAGAGGGTTGCT
genomic: TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAGgtatgacctt ... gtttcaatagGTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGG-TTGCT
EST: gi|125213846|gb|EL228607.1|EL228607
EST:     AGGCGGTTTAG                         GTGCTTACAGTGATTCAAGTAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCT
genomic: AGGCGGTTTAGgtatgacctt ... gtttcaatagGTGCTTACAGTGATTCAAG-AGGCCTTCCAGGAGTTAGGAAAGAGGTTGCT
EST: gi|125220910|gb|EL234995.1|EL234995
EST:     TGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAG                         GTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGTTG
genomic: TGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAGgtatgacctt ... gtttcaatagGTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTG
EST: gi|86074116|gb|DR369873.1|DR369873
EST:     TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAG                         GTGCTTACAGTGATTCAAGAGGCCTTCCASGAGTTAGGAAAGAGGTTGCTG
genomic: TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAGgtatgacctt ... gtttcaatagGTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTG
EST: gi|124866328|gb|EH950765.1|EH950765
EST:     CTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAG                         GTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTG
genomic: CTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAGgtatgacctt ... gtttcaatagGTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTG
EST: gi|116434562|gb|EG477154.1|EG477154
EST:     TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAG                         GTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTG
genomic: TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAGgtatgacctt ... gtttcaatagGTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTG
EST: gi|124768536|gb|EH858666.1|EH858666
EST:     ATTATCTTTCCTTGACTTCAGGCGGTTTAG                         GTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTG
genomic: ATTATCTTTCCTTGACTTCAGGCGGTTTAGgtatgacctt ... gtttcaatagGTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTG
EST: gi|125279033|gb|EL293118.1|EL293118
EST:     TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAG                         GTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGG
genomic: TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAGgtatgacctt ... gtttcaatagGTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGG
EST: gi|86074139|gb|DR369896.1|DR369896
EST:     TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAG                         GNGCTTACAGTGATTCAAGAGGCCTTCCA
genomic: TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAGgtatgacctt ... gtttcaatagGTGCTTACAGTGATTCAAGAGGCCTTCCA
EST: gi|125049222|gb|EL121491.1|EL121491
EST:     TGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAG                         GTGCTTACAGCGATTCAAGAGGCCTTCCAGGAGTTAGGAGAGAGGTTGCTG
genomic: TGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAGgtatgacctt ... gtttcaatagGTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTG
EST: gi|124946181|gb|EL022126.1|EL022126
EST:     TTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAG                         GTGCTTACAGTGATTCAAGAGGCCT-CCAGGAGTTAGGAAAGAGGTTGCTG
genomic: TTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAGgtatgacctt ... gtttcaatagGTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTG
EST: gi|86074115|gb|DR369872.1|DR369872
EST:     TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAG                         GTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTG
genomic: TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAGgtatgacctt ... gtttcaatagGTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTG
EST: gi|116482910|gb|EG525502.1|EG525502
EST:     TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAG                         GTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTG
genomic: TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAGgtatgacctt ... gtttcaatagGTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTG
EST: gi|125029855|gb|EL102124.1|EL102124
EST:     AGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAG                         GTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTG
genomic: AGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAGgtatgacctt ... gtttcaatagGTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTG
EST: gi|116400460|gb|EG443052.1|EG443052
EST:     TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAG                         GTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTG
genomic: TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAGgtatgacctt ... gtttcaatagGTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTG
EST: gi|86074107|gb|DR369864.1|DR369864
EST:     TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAG                         GTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTG
genomic: TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAGgtatgacctt ... gtttcaatagGTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTG
EST: gi|86074110|gb|DR369867.1|DR369867
EST:     TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAG                         GTGCTTACGGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTG
genomic: TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAGgtatgacctt ... gtttcaatagGTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTG
EST: gi|124991708|gb|EL063977.1|EL063977
EST:     TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGCTTAG                         GTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTT
genomic: TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAGgtatgacctt ... gtttcaatagGTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTT
EST: gi|86074127|gb|DR369884.1|DR369884
EST:     TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAG                         GNGCTTACAGNGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTG
genomic: TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAGgtatgacctt ... gtttcaatagGTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTG
EST: gi|86074144|gb|DR369901.1|DR369901
EST:     TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAG                         GTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTG
genomic: TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAGgtatgacctt ... gtttcaatagGTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTG
EST: gi|86074123|gb|DR369880.1|DR369880
EST:     TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAG                         GTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTG
genomic: TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAGgtatgacctt ... gtttcaatagGTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTG
EST: gi|86074125|gb|DR369882.1|DR369882
EST:     TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGNTTAG                         GGGCTTACAGGGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGG
genomic: TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAGgtatgacctt ... gtttcaatagGTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGG
EST: gi|125253943|gb|EL268028.1|EL268028
EST:     TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAG                         GTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAG
genomic: TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAGgtatgacctt ... gtttcaatagGTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAG
EST: gi|124771133|gb|EH861263.1|EH861263
EST:     AGCTGAACATTATCTTTCCTTGACTTCAGGCGGTTTAG                         GTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTG
genomic: AGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAGgtatgacctt ... gtttcaatagGTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTG
EST: gi|124813951|gb|EH898817.1|EH898817
EST:     TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAG                         GTGCTTACAGTGATTCAAGAGGCCTTCCAGGAG
genomic: TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAGgtatgacctt ... gtttcaatagGTGCTTACAGTGATTCAAGAGGCCTTCCAGGAG
EST: gi|86074132|gb|DR369889.1|DR369889
EST:     TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAG                         GTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTG
genomic: TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAGgtatgacctt ... gtttcaatagGTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTG
EST: gi|125028673|gb|EL100942.1|EL100942
EST:     TTATCTTTCCTTGACTTCAGGCGG-TTAG                         GTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTG
genomic: TTATCTTTCCTTGACTTCAGGCGGTTTAGgtatgacctt ... gtttcaatagGTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTG
EST: gi|86074106|gb|DR369863.1|DR369863
EST:     TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAG                         GTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTG
genomic: TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAGgtatgacctt ... gtttcaatagGTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTG
EST: gi|125044346|gb|EL116615.1|EL116615
EST:     TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAG                         GTGCTTACAGTGATTCAAGAGGCCTT
genomic: TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAGgtatgacctt ... gtttcaatagGTGCTTACAGTGATTCAAGAGGCCTT
EST: gi|86074109|gb|DR369866.1|DR369866
EST:     TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAG                         GTGCTTACAGTGATTCAAGAGGCCTTCC
genomic: TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAGgtatgacctt ... gtttcaatagGTGCTTACAGTGATTCAAGAGGCCTTCC
EST: gi|86074129|gb|DR369886.1|DR369886
EST:     TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAG                         GTGCTTACAGTGATTCAAGAGGC
genomic: TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAGgtatgacctt ... gtttcaatagGTGCTTACAGTGATTCAAGAGGC
EST: gi|86074143|gb|DR369900.1|DR369900
EST:     TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGGTTAG                         GTGCTTACAGTGATTCAAGANGCCTTCCAGGAGTTAGGAAAG
genomic: TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAGgtatgacctt ... gtttcaatagGTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAG
EST: gi|152038525|gb|AV826916.2|AV826916
EST:     TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAG                         GTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTG
genomic: TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAGgtatgacctt ... gtttcaatagGTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTG
EST: gi|86074136|gb|DR369893.1|DR369893
EST:     TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAG                         GTGCTTACAGTGATTCAAGAGGCC
genomic: TGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAGgtatgacctt ... gtttcaatagGTGCTTACAGTGATTCAAGAGGCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTCCGTTTCTACTAGATGACCCAAATGTTGGAATGCTATTTCCAGCTGATGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAGgtatgaccttatgagcccatctataatatgtagattagtgttgacaaacagaacagttagttatattgcctttttctgtttcaatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT