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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACAAAGACAACAACTTTGAACTCTACAAGCAAGCAGCTGAGAATTTCATGTGTAAGATCCTTCCAAATTCTCCATCCTCGTCAACAAAGTACACTAAAGgtaaactcaacacagagttctctccaaaagcatttcaattactcaaatactaaaagctataactttcag

Basic information

species Arabidopsis thaliana
transcript AT1G22880.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G22880.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA06G48140.1 (Glycine max), 5'ss of exon 4
AACAAAGACAACAACTTTGAACTCTACAAGCAAGCAGCTGAGAATTTCATGTGTAAGATCCTTCCAAATTCTCCATCCTCGTCAACAAAGTACACTAAAGgtaaactcaacac----agagttctctccaaaagcatttcaattactcaaatactaaaagctataactttcag-----------------------------------------------------------------------------------------------------------
||    || || || ||||| |  |||||||||| |||||||||||| ||||| ||||||||||| || ||||| || ||    ||| | || ||  ||||||||  |||||     |  |   | || |||  ||  |   | | |||||  |    |    | |  | ||                                                                                                            
AATGGTGATAAGAATTTTGATCAATACAAGCAAGAAGCTGAGAATTTTATGTGCAAGATCCTTCCCAACTCTCCCTCTTCAAGTACACAATATACACAAGgtaaaggcaacatcactactgaattttcaaaacacagctgggtcaatcaaagtcatgcattactgatatacaagaaaacatgacaaatatttgcatccacgatcaataaatttactttgaagtgctttaaaagtattataaaaggcactaattgtatgtggtacttttatttatgggcag