Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAACATCTCAACGTCCTTCTTGGCGAGCTGATGTAGCTAGTGTGGATACTAACCGCAGTTCTGTGCTTCTCATGGATGATTTGACGCTTTTCGCCCACGgtaaatctatttcgtgtaataaaactattgatcaggcttttcctttcattgttctcacttgcaagtaaagtttgatgtgagcttgtgagttgtctcttggttaaagtaaattcaatgatggatttaagcattgcttttggtttatatacatgttgtcgtgttaatgatgatgatctcctctgctttcag

Basic information

species Arabidopsis thaliana
transcript AT1G22100.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116379659|gb|EG422251.1|EG422251
EST:     TAACCGCAGTTCTGTGCTTCTCATGGATGATTTGACGCTTTTCGCCCACG                         GTCATGTTGAGGATAAACCATGCTTAAGTGTTGAAATAAAG
genomic: TAACCGCAGTTCTGTGCTTCTCATGGATGATTTGACGCTTTTCGCCCACGgtaaatctat ... ctgctttcagGTCATGTTGAGGATAAACCATGCTTAAGTGTTGAAATAAAG
EST: gi|116379645|gb|EG422237.1|EG422237
EST:     TAACCGCAGTTCTGTGCTTCTCATGGATGATTTGACGCTTTTCGCCCACG                         GTCATGTTGAGGATAAACCATGCTTAAGTGTTGAAATAAAG
genomic: TAACCGCAGTTCTGTGCTTCTCATGGATGATTTGACGCTTTTCGCCCACGgtaaatctat ... ctgctttcagGTCATGTTGAGGATAAACCATGCTTAAGTGTTGAAATAAAG
EST: gi|116379652|gb|EG422244.1|EG422244
EST:     TAACCGCAGTTCTGTGCTTCTCATGGATGATTTGACGCTTTTCGCCCACG                         GTCATGTTGAGGATAAACCATGCTTAAGTGTTGAAATAAAG
genomic: TAACCGCAGTTCTGTGCTTCTCATGGATGATTTGACGCTTTTCGCCCACGgtaaatctat ... ctgctttcagGTCATGTTGAGGATAAACCATGCTTAAGTGTTGAAATAAAG
EST: gi|116379662|gb|EG422254.1|EG422254
EST:     TAACCGCAGTTCTGTGCTTCTCATGGATGATTTGACGCTTTTCGCCCACG                         GTCATGTTGAGGATAAACCATGCTTAAGTGTTGAAATAAAG
genomic: TAACCGCAGTTCTGTGCTTCTCATGGATGATTTGACGCTTTTCGCCCACGgtaaatctat ... ctgctttcagGTCATGTTGAGGATAAACCATGCTTAAGTGTTGAAATAAAG
EST: gi|116379661|gb|EG422253.1|EG422253
EST:     TAACCGCAGTTCTGTGCTTCTCATGGATGATTTGACGCTTTTCGCCCACG                         GTCATGTTGAGGATAAACCATGCTTAAGTGTTGAAATAAAG
genomic: TAACCGCAGTTCTGTGCTTCTCATGGATGATTTGACGCTTTTCGCCCACGgtaaatctat ... ctgctttcagGTCATGTTGAGGATAAACCATGCTTAAGTGTTGAAATAAAG
EST: gi|116379648|gb|EG422240.1|EG422240
EST:     TAACCGCAGTTCTGTGCTTCTCATGGATGATTTGACGCTTTTCGCCCACG                         GTCATGTTGAGGATAAACCATGCTTAAGTGTTGAAATAAAG
genomic: TAACCGCAGTTCTGTGCTTCTCATGGATGATTTGACGCTTTTCGCCCACGgtaaatctat ... ctgctttcagGTCATGTTGAGGATAAACCATGCTTAAGTGTTGAAATAAAG
EST: gi|116379656|gb|EG422248.1|EG422248
EST:     TAACCGCAGTTCTGTGCTTCTCATGGATGATTTGACGCTTTTCGCCCACG                         GTCATGTTGAGGATAAACCATGCTTAAGTGTTGAAATAAAG
genomic: TAACCGCAGTTCTGTGCTTCTCATGGATGATTTGACGCTTTTCGCCCACGgtaaatctat ... ctgctttcagGTCATGTTGAGGATAAACCATGCTTAAGTGTTGAAATAAAG
EST: gi|116379651|gb|EG422243.1|EG422243
EST:     TAACCGCAGTTCTGTGCTTCTCATGGATGATTTGACGCTTTTCGCCCACG                         GTCATGTTGAGGATAAACCATGCTTAAGTGTTGAAATAAAG
genomic: TAACCGCAGTTCTGTGCTTCTCATGGATGATTTGACGCTTTTCGCCCACGgtaaatctat ... ctgctttcagGTCATGTTGAGGATAAACCATGCTTAAGTGTTGAAATAAAG
EST: gi|116379643|gb|EG422235.1|EG422235
EST:     TAACCGCAGTTCTGTGCTTCTCATGGATGATTTGACGCTTTTCGCCCACG                         GTCATGTTGAGGATAAACCATGCTTAAGTGTTGAAATAAAG
genomic: TAACCGCAGTTCTGTGCTTCTCATGGATGATTTGACGCTTTTCGCCCACGgtaaatctat ... ctgctttcagGTCATGTTGAGGATAAACCATGCTTAAGTGTTGAAATAAAG
EST: gi|116379654|gb|EG422246.1|EG422246
EST:     TAACCGCAGTTCTGTGCTTCTCATGGATGATTTGACGCTTTTCGCCCACG                         GTCATGTTGAGGATAAACCATGCTTAAGTGTTGAAATAAAG
genomic: TAACCGCAGTTCTGTGCTTCTCATGGATGATTTGACGCTTTTCGCCCACGgtaaatctat ... ctgctttcagGTCATGTTGAGGATAAACCATGCTTAAGTGTTGAAATAAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATAACATCTCAACGTCCTTCTTGGCGAGCTGATGTAGCTAGTGTGGATACTAACCGCAGTTCTGTGCTTCTCATGGATGATTTGACGCTTTTCGCCCACGgtaaatctatttcgtgtaataaaactattgatcaggcttttcctttcattgttctcacttgcaagtaaagtttgatgtgagcttgtgagttgtctcttggttaaagtaaattcaatgatggatttaagcattgcttttggtttatatacatgttgtcgtgttaatgatgatgatctcctctgctttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA