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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAACCAAAAGAACAAAGTTTTTATGGTGATTGGTATCAATACTGCATTTAGCAGTCGAAAACGTCGCGATTCGCTTAGAGAGACTTGGATGCCTCAAGgtatctgtgatgtccatccttcaaatctctggttactttcaatgcttcattgcctctaatcttatttagcttttgtatgtcatctatcacag

Basic information

species Arabidopsis thaliana
transcript AT1G22015.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G22015.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv07s0031g03090.t01 (Vitis vinifera), 5'ss of exon 4
GGAAACCAAAAGAACAAAGTTTTTATGGTGATTGGTATCAATACTGCATTTAGCAGTCGAAAACGTCGCGATTCGCTTAGAGAGACTTGGATGCCTCAAGgtatctgtgatgtccatccttcaaatctctggttactttcaatg-cttcattgcctctaatcttatttagcttttgtatgtcatctatcacag
 |    |  | ||| || | ||||||||| ||||| || |||||||| ||||| ||| ||||| | || |||||  | |||||||||||||||||| |||||||   |  | ||    ||| | |||     | | ||||  || ||| |     |  || || | |   ||||  | | | ||         
AGTTCTCCTAGGAAGAAGGCTTTTATGGTTATTGGAATAAATACTGCTTTTAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAGgtat---tactatc---acttgatatcagctatgagtttctctgacttaaaaatttacaaactcact---ctttaatgtttgattag------

upper sequence: AT1G22015.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: EFJ30358 (Selaginella moellendorffii), 5'ss of exon 4
GGAAACCAAAAGAACAAAGTTTTTATGGTGATTGGTATCAATACTGCATTTAGCAGTCGAAAACGTCGCGATTCGCTTAGAGAGACTTGGATGCCTCAAGgtatctgtgat---gtccatccttcaaatctctggttactttcaatgcttcattgcctctaatcttatttagcttttgtatgtcatctatcacag
|   | |      | ||||||||| | ||||| || || || || || ||||||||||| || ||||| |||||  || ||||||| ||||||||||||||||  |  |        ||| || ||| |   ||  |  ||||| | ||||                                            
GCTGAGCCTCGACAGAAAGTTTTTGTTGTGATCGGAATAAACACCGCTTTTAGCAGTCGTAAGCGTCGTGATTCCGTTCGAGAGACATGGATGCCTCAAGgtaaattcggctcaacgcattct-caagtgcttgactcttttcatttcttccag-----------------------------------------

upper sequence: AT1G22015.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: EFJ28470 (Selaginella moellendorffii), 5'ss of exon 4
GGAAACCAAAAGAACAAAGTTTTTATGGTGATTGGTATCAATACTGCATTTAGCAGTCGAAAACGTCGCGATTCGCTTAGAGAGACTTGGATGCCTCAAGgtatctgtgat---gtccatccttcaaatctctggttactttcaatgcttcattgcctctaatcttatttagcttttgtatgtcatctatcacag
|   | |      | ||||||||| | ||||| || ||||| || || ||||||||||| || |||||||||||  || ||||||| ||||||||||||||||  |  |        ||| || ||| |   ||  || ||||| |  |||                                            
GCTGAGCCTCGACAGAAAGTTTTTGTTGTGATCGGAATCAACACGGCTTTTAGCAGTCGTAAGCGTCGCGATTCCGTTCGAGAGACATGGATGCCTCAAGgtaaattcggctcaacgcattct-caagtgcttgactattttcattttttccag-----------------------------------------