Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTCTCTTTGCTCTTCAAGGAAACGGTAGAAAACTCTTTTGTGGTCTCGCAGCTACTGTTTTCTCCATCATCATGTACGCTTCTCCACTCTCCATCATGgtaagcaaactcaggattggatctttttaaagttctactctttacttttggattcattttgttaaattttgtgtttggttcattgatttacag

Basic information

species Arabidopsis thaliana
transcript AT1G21460.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G21460.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv18s0001g15330.t01 (Vitis vinifera), 5'ss of exon 4
CTCTCTCTTTGCTCTTCAAGGAAACGGTAGAAAACTCTTTTGTGGTCTCGCAGCTACTGTTTTCTCCATCATCATGTACGCTTCTCCACTCTCCATCATGgtaagcaaactcaggattggatctttttaaagttctactctttacttttggattcattttgttaaattttgtgtttggttcattg---atttacag
||| ||||| ||  | || ||  |  | || || ||||| |||||| | || || ||  ||||||||||||||||||| || || || || |||||||||||||||  | |          | | ||||    |||  |   ||     |  |  |||   |   |||         | | |||    | || |||
CTCCCTCTTCGCCTTACATGGCCATAGCAGGAAGCTCTTCTGTGGTTTGGCCGCCACCATTTTCTCCATCATCATGTATGCATCACCTCTGTCCATCATGgtaagctcagtttactccctttttctttagtagtctcttgaataagacagactggattggatgggattaaactccctgattattatgtaattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124923016|gb|EL001250.1|EL001250
EST:     CAGCTACTGTTTTCTCCATCATCATGTACGCTTCTCCACTCTCTATCATG                         AGATTGGTGGTAAA
genomic: CAGCTACTGTTTTCTCCATCATCATGTACGCTTCTCCACTCTCCATCATGgtaagcaaac ... tgatttacagAGATTGGTGGTAAA
EST: gi|86082349|gb|DR378108.1|DR378108
EST:     CAGCTACTGTTTTCTCCATCATCATGTACGCTTCTCCACTCTCCATCATG                         AGATTGGTGGTAAAGACGAAGAGTGTAGAGTTTATGCCATTCTTTTTGTCA
genomic: CAGCTACTGTTTTCTCCATCATCATGTACGCTTCTCCACTCTCCATCATGgtaagcaaac ... tgatttacagAGATTGGTGGTAAAGACGAAGAGTGTAGAGTTTATGCCATTCTTTTTGTCA
EST: gi|86075238|gb|DR370995.1|DR370995
EST:     CAGCTACTGTTTTCTCCATCATCATGTACGCTTCTCCACTCTCCATCATG                         AGATTGGTGGTAAAGACGAAGAGTGTAGAGTTTATGCCATTCTTTTTGTCA
genomic: CAGCTACTGTTTTCTCCATCATCATGTACGCTTCTCCACTCTCCATCATGgtaagcaaac ... tgatttacagAGATTGGTGGTAAAGACGAAGAGTGTAGAGTTTATGCCATTCTTTTTGTCA
EST: gi|19876186|gb|AU237017.1|AU237017
EST:     CAGCTACTGTTTTCTCCATCATCATGTACGCTTCTCCACTCTCCATCATG                         AGATTGGTGGTAAAGACGAAGAGTGTAGAGNTTATGCCATTCTTTTTGNCA
genomic: CAGCTACTGTTTTCTCCATCATCATGTACGCTTCTCCACTCTCCATCATGgtaagcaaac ... tgatttacagAGATTGGTGGTAAAGACGAAGAGTGTAGAGTTTATGCCATTCTTTTTGTCA