1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGAAGATTTCCGTGAGACTTTCAAGAAGGAAAACCCCAAGAACAAGTCTGTAGCTACTgtgagtgttatttgtgatcatattaaaacttgttattgatgttgttccttaatctttggatttgtgaagttgtactgatggtcaattacttcaatggattacag
species | Arabidopsis thaliana |
transcript | AT1G20693.3 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAAGGAAAACCCCAAGAACAAGTCTGTAGCTACT GTTGGAAAAGCTGCTGGAGACAAGTGGAAGTCCTTATCTGATTCTEST: gi|164010533|gb|ES061091.1|ES061091
genomic: GAAGGAAAACCCCAAGAACAAGTCTGTAGCTACTgtgagtgtta ... tggattacagGTTGGAAAAGCTGCTGGAGACAAGTGGAAGTCCTTGTCTGATTCT
EST: TCCGTGAGACTTTCAAGAAGGAAAACCCCAAGAACAAGTCTGTAGCTACT GTTGGAAAAGCTGCTGGAGACAAGTGGAAGTCCTTATCTGATTCTEST: gi|164158781|gb|ES187958.1|ES187958
genomic: TCCGTGAGACTTTCAAGAAGGAAAACCCCAAGAACAAGTCTGTAGCTACTgtgagtgtta ... tggattacagGTTGGAAAAGCTGCTGGAGACAAGTGGAAGTCCTTGTCTGATTCT
EST: TCCGTGAGACTTTCAAGAAGGAAAACCCCAAGAACAAGTCTGTAGCTACT GTTGGAAAAGCTGCTGGAGACAAGTGGAAGTCCTTATCTGATTCEST: gi|163969828|gb|ES148976.1|ES148976
genomic: TCCGTGAGACTTTCAAGAAGGAAAACCCCAAGAACAAGTCTGTAGCTACTgtgagtgtta ... tggattacagGTTGGAAAAGCTGCTGGAGACAAGTGGAAGTCCTTGTCTGATTC
EST: AAGAAGGAAAACCCCAAGAACAAGTCTGTAGCTACT GTTGGAAAAGCTGCTGGAGACAAGTGGAAGTCCTTATCTGATTCTEST: gi|164237972|gb|ES129256.1|ES129256
genomic: AAGAAGGAAAACCCCAAGAACAAGTCTGTAGCTACTgtgagtgtta ... tggattacagGTTGGAAAAGCTGCTGGAGACAAGTGGAAGTCCTTGTCTGATTCT
EST: CTGTAGCTACT GTTGGAAAAGCTGCTGGAGACAAGTGGAAGTCCTTATCTGATTCTEST: gi|116400368|gb|EG442960.1|EG442960
genomic: CTGTAGCTACTgtgagtgtta ... tggattacagGTTGGAAAAGCTGCTGGAGACAAGTGGAAGTCCTTGTCTGATTCT
EST: TCCGTGAGACTTTCAAGAAGGAAAACCCCAAGAACAAGTCTGTAGCTACT GTTGGAAAAGCTGCTGGAGACAAGTGGAAGTCCTTGTCTGATTCT
genomic: TCCGTGAGACTTTCAAGAAGGAAAACCCCAAGAACAAGTCTGTAGCTACTgtgagtgtta ... tggattacagGTTGGAAAAGCTGCTGGAGACAAGTGGAAGTCCTTGTCTGATTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAGATTTCCGTGAGACTTTCAAGAAGGAAAACCCCAAGAACAAGTCTGTAGCTACTgtgagtgttatttgtgatcatattaaaacttgttattgatgttgttccttaatctttggatttgtgaagttgtactgatggtcaattacttcaatggattacag
- - - - - - - - - - - AAGAAG
- - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - AAGAAC