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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTCTTTGTGTGTTAAAAGACTTGTTTATACTAATGACCAAGGAGAGACTGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtactaatgaataagtcttgtgtaagtttataacttattcacttattcaactattgtgttttcttttactttatttttcag

Basic information

species Arabidopsis thaliana
transcript AT1G20020.3
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125221622|gb|EL235707.1|EL235707
EST:     AAAGGAGTTTGCTCAAATCTCTTGT                         GTGATTTGGCACCCGGAAGTGATGTTAAGCTGACTGGTCCTGTAGG
genomic: AAAGGAGTTTGCTCAAATTTCTTGTgtaagtacta ... tatttttcagGTGATTTGGCACCCGGAAGTGATGTTAAGCTGACTGGTCCTGTAGG
EST: gi|125063178|gb|EL131251.1|EL131251
EST:     TACTAATGACCAAGGAGAGACTGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGATTTGGCACCCGGAAGTGATGTTAAGCTGACTGGTCCTG
genomic: TACTAATGACCAAGGAGAGACTGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtacta ... tatttttcagGTGATTTGGCACCCGGAAGTGATGTTAAGCTGACTGGTCCTG
EST: gi|86065482|gb|DR361239.1|DR361239
EST:     TACTAATGACCAAGGAGAGACTGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGATTTGGCACCCGGAAGTGATGTTAAGCTGACTGGTCCTGTAGGCAAAG
genomic: TACTAATGACCAAGGAGAGACTGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtacta ... tatttttcagGTGATTTGGCACCCGGAAGTGATGTTAAGCTGACTGGTCCTGTAGGCAAAG
EST: gi|124743255|gb|EH834417.1|EH834417
EST:     TACTAATGACCAAGGAGAGACTGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGATTTGGCACCCGG
genomic: TACTAATGACCAAGGAGAGACTGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtacta ... tatttttcagGTGATTTGGCACCCGG
EST: gi|124960086|gb|EL034778.1|EL034778
EST:     TACTAATGACCAAGGAGAGACTGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGATTTGGCACCCGGAAGTGAT
genomic: TACTAATGACCAAGGAGAGACTGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtacta ... tatttttcagGTGATTTGGCACCCGGAAGTGAT
EST: gi|116472061|gb|EG514653.1|EG514653
EST:     TACTAATGACCAAGGAGAGACTGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGATTTGGCACCCGGAAGTGATGTTAAGCTGACTGGTCCTGTAGGCAAAG
genomic: TACTAATGACCAAGGAGAGACTGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtacta ... tatttttcagGTGATTTGGCACCCGGAAGTGATGTTAAGCTGACTGGTCCTGTAGGCAAAG
EST: gi|125158342|gb|EL186985.1|EL186985
EST:     TACTAATGACCAAGGAGAGACTGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGATTTGGCACCCGGAAGTGATGTTAA
genomic: TACTAATGACCAAGGAGAGACTGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtacta ... tatttttcagGTGATTTGGCACCCGGAAGTGATGTTAA
EST: gi|125118933|gb|EL167399.1|EL167399
EST:     ACCAAGGAGAGACTGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGATTTGGCACCCGGAAGTGATGTTAAGCTGACTGGTCCTGTAGGCAAAG
genomic: ACCAAGGAGAGACTGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtacta ... tatttttcagGTGATTTGGCACCCGGAAGTGATGTTAAGCTGACTGGTCCTGTAGGCAAAG
EST: gi|125197079|gb|EL212033.1|EL212033
EST:     TACTAATGACCAAGGAGAGACTGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGATTTGGCACCCGGAAGTGATGTTAAG
genomic: TACTAATGACCAAGGAGAGACTGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtacta ... tatttttcagGTGATTTGGCACCCGGAAGTGATGTTAAG
EST: gi|124867720|gb|EH952157.1|EH952157
EST:     TCAAATTTCTTGT                         GTGATTTGGCACCCGGAAGTGATGTTAAGCTGACTGGTCCTGTAGGCAAAG
genomic: TCAAATTTCTTGTgtaagtacta ... tatttttcagGTGATTTGGCACCCGGAAGTGATGTTAAGCTGACTGGTCCTGTAGGCAAAG
EST: gi|124983063|gb|EL055821.1|EL055821
EST:     CTGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGATTTGGCACCCGGAAGTGATGTTAAGCTGACTGGTCCTGTAGGCAAAA
genomic: CTGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtacta ... tatttttcagGTGATTTGGCACCCGGAAGTGATGTTAAGCTGACTGGTCCTGTAGGCAAA-
EST: gi|125317036|gb|EL331121.1|EL331121
EST:     TACTAATGACCAAGGAGAGACTGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGATTTGGCACCCGG
genomic: TACTAATGACCAAGGAGAGACTGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtacta ... tatttttcagGTGATTTGGCACCCGG
EST: gi|125050081|gb|EL122350.1|EL122350
EST:     TACTAATGACCAAGGAGAGACTGTTAAAGGAGTTTGCTCAAATTTCTCGT                         GTGATTTGGCACCCGGAAGTGATGTTAAGCTGACTGGTCC
genomic: TACTAATGACCAAGGAGAGACTGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtacta ... tatttttcagGTGATTTGGCACCCGGAAGTGATGTTAAGCTGACTGGTCC
EST: gi|125022586|gb|EL094855.1|EL094855
EST:     AAATTTCTTGT                         GTGATTTGGCACCCGGAAGTGATGTTAAGCTGACTGGTCCTGTAGGCAAAG
genomic: AAATTTCTTGTgtaagtacta ... tatttttcagGTGATTTGGCACCCGGAAGTGATGTTAAGCTGACTGGTCCTGTAGGCAAAG
EST: gi|125021112|gb|EL093381.1|EL093381
EST:     TACTAATGACCAAGGAGAGACTGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGATTTGGCACCCGGAAGTGA
genomic: TACTAATGACCAAGGAGAGACTGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtacta ... tatttttcagGTGATTTGGCACCCGGAAGTGA
EST: gi|124765891|gb|EH856021.1|EH856021
EST:     TACTAATGACCAAGGAGAGACTGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGATTTGGCACCCGGAA
genomic: TACTAATGACCAAGGAGAGACTGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtacta ... tatttttcagGTGATTTGGCACCCGGAA
EST: gi|47829155|gb|CK118839.1|CK118839
EST:     TACTAATGACCAAGGAGAGACTGTTAAAGGAGTTTGCTCAAATTTCTTGT                         GTGATTTGGCACCCGGAAGTGATGTTAAGCTGACTGGTCCTGTANGCAAAG
genomic: TACTAATGACCAAGGAGAGACTGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtacta ... tatttttcagGTGATTTGGCACCCGGAAGTGATGTTAAGCTGACTGGTCCTGTAGGCAAAG
EST: gi|124967520|gb|EL041550.1|EL041550
EST:     CTCAAATTTCTTGT                         GTGATTTGGCACCCGGAAGTGATGTTAAGCTGACTGGTCCTGTAGGCAAAG
genomic: CTCAAATTTCTTGTgtaagtacta ... tatttttcagGTGATTTGGCACCCGGAAGTGATGTTAAGCTGACTGGTCCTGTAGGCAAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTTCTTTGTGTGTTAAAAGACTTGTTTATACTAATGACCAAGGAGAGACTGTTAAAGGAGTTTGCTCAAATTTCTTGTgtaagtactaatgaataagtcttgtgtaagtttataacttattcacttattcaactattgtgttttcttttactttatttttcag

- - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG