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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCAGCTTACGATACAATCGAGAAGAAGATGGCGTTTTTCGATCCTTCTCGTGCAAAAGAGTTTCTTTTCATTTCTGGAACAAAGgtaagagacagttttgagacttaagattcttattgaaggctccaagtttcgaggttctgcttatgtgcgattacacctgagtttttattcggtgttttttgttgtgcttacag

Basic information

species Arabidopsis thaliana
transcript AT1G19920.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G19920.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv18s0001g14010.t01 (Vitis vinifera), 5'ss of exon 4
GTTGCAGCTTACGATACAATCGAGAAGAAGATGGCGTTTTTCGATCCTTCTCGTGCAAAAGAGTTTCTTTTCATTTCTGGAACAAAGgtaagagacagttttgagacttaagattcttattgaaggctccaagtttcgaggttctgcttatgtgcgattacacctgagtttttattcggtgttttttgttg-tgcttacag
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GTTGCAGCATATGACACAGTGGGAAAGAAGATGGCCTTTTTTGATCCTTCACGTGCTAAGGATTTTCTCTTCATTTCAGGAACCAAGgtagca-acagcatt-----ctgatctcctagttgtcagt----agtgt--aacttatgcct-cgtggagctgaaaacagtttttggaatggcaatttttgttggtagttgca-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86077601|gb|DR373358.1|DR373358
EST:     TTTTCGATCCTTCTCGTGCAAAAGAGTTTCTTTTCATTTCTGGAACAAAG                         ATGCGAACTTATGCAAGAACAGGGGAGAATCCTCCAGATGGATTTATGTGT
genomic: TTTTCGATCCTTCTCGTGCAAAAGAGTTTCTTTTCATTTCTGGAACAAAGgtaagagaca ... gtgcttacagATGCGAACTTATGCAAGAACAGGGGAGAATCCTCCAGATGGATTTATGTGT
EST: gi|116412934|gb|EG455526.1|EG455526
EST:     TTTTCGATCCTTCTCGTGCAAAAGAGTTTCTTTTCATTTCTGGAACAAAG                         ATGCGAACTTATGCAAGAACAGGGGAGAATCCTCCAGATGGATTTATGTGT
genomic: TTTTCGATCCTTCTCGTGCAAAAGAGTTTCTTTTCATTTCTGGAACAAAGgtaagagaca ... gtgcttacagATGCGAACTTATGCAAGAACAGGGGAGAATCCTCCAGATGGATTTATGTGT
EST: gi|124808915|gb|EH894789.1|EH894789
EST:     GATCCTTCTCGTGCAAAAGAGTTTCTTTTCATTTCTGGAACAAAG                         ATGCGAACTTATGCAAGAACAGGGGAGAAT
genomic: GATCCTTCTCGTGCAAAAGAGTTTCTTTTCATTTCTGGAACAAAGgtaagagaca ... gtgcttacagATGCGAACTTATGCAAGAACAGGGGAGAAT
EST: gi|125308543|gb|EL322628.1|EL322628
EST:     TCTTTTCATTTCTGGAACAAAG                         ATGCGAACTTTATTGCAAGAACAGGGGAGAATCCTCCAGATGGATTTATGT
genomic: TCTTTTCATTTCTGGAACAAAGgtaagagaca ... gtgcttacagATGCGAAC-TTA-TGCAAGAACAGGGGAGAATCCTCCAGATGGATTTATGT
EST: gi|86034470|gb|DR330223.1|DR330223
EST:     TTTTCGATCCTTCTCGTGCAAAAGAGTTTCTTTTCATTTCTGGAACAAAG                         ATGCGAACTTATGCAAGAACAGGGGAGAATCCTCCAGATGGATTTATGTGT
genomic: TTTTCGATCCTTCTCGTGCAAAAGAGTTTCTTTTCATTTCTGGAACAAAGgtaagagaca ... gtgcttacagATGCGAACTTATGCAAGAACAGGGGAGAATCCTCCAGATGGATTTATGTGT
EST: gi|86034473|gb|DR330226.1|DR330226
EST:     TTTTCGATCCTTCTCGTGCAAAAGAGTTTCTTTTCATTTCTGGAACAAAG                         ATGCGAACTTATGCAAGAACAGGGGAGAATCCTCCAGATGGATTTATGTGT
genomic: TTTTCGATCCTTCTCGTGCAAAAGAGTTTCTTTTCATTTCTGGAACAAAGgtaagagaca ... gtgcttacagATGCGAACTTATGCAAGAACAGGGGAGAATCCTCCAGATGGATTTATGTGT
EST: gi|124858450|gb|EH942887.1|EH942887
EST:     CTGGAACAAAG                         ATGCGAACTTATGCAAGAACAGGGGAGAATCCTCCAGATGGATTTATGTGT
genomic: CTGGAACAAAGgtaagagaca ... gtgcttacagATGCGAACTTATGCAAGAACAGGGGAGAATCCTCCAGATGGATTTATGTGT
EST: gi|86034472|gb|DR330225.1|DR330225
EST:     TTTCGATCCTTCTCGTGCAAAAGAGTTTCTTTTCATTTTCTGGAACAAAG                         ATGCGAACTTTATGCAAGAACA
genomic: TTTCGATCCTTCTCGTGCAAAAGAGTTTCTTTTCATTT-CTGGAACAAAGgtaagagaca ... gtgcttacagATGCGAACTT-ATGCAAGAACA
EST: gi|116412935|gb|EG455527.1|EG455527
EST:     TTTTCGATCCTTTTCGTGCAAAAGAGTTTCTTTTCATTTTTGGAACAAAG                         ATGCGAACTTATGCAAGAACAGGGGAGAATCCTCCAGATGGATTTATGTGT
genomic: TTTTCGATCCTTCTCGTGCAAAAGAGTTTCTTTTCATTTCTGGAACAAAGgtaagagaca ... gtgcttacagATGCGAACTTATGCAAGAACAGGGGAGAATCCTCCAGATGGATTTATGTGT