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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTTGAAAAATTTCACTAAAACTGCTCGGGATCTTATAATCCAGTTGCAAAAGATTGATAGTGATAACTACCCTGAGgtattgtcggctgccaatgatatttattagcaaaacctgtttctgagcattgtttgataatatgtgatatgacatgtgcag

Basic information

species Arabidopsis thaliana
transcript AT1G19650.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G19650.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os02g04020.1 (Oryza sativa), 5'ss of exon 6
GGCTTGAAAAATTTCACTAAAACTGCTCGGGATCTTATAATCCAGTTGCAAAAGATTGATAGTGATAACTACCCTGAGgtattgtcggctgccaatgatatttattagcaaaac-ctgt----ttctgagcattgtttgataatatgtgatatgacatgtgcag
|| |||||||||||||  |||||||| || ||  | ||  |||  |||||||| ||||||| |||||||||||| |||||| ||||  || |  |      | || |||| |   ||||     | |      |   |  |  |  ||| | | |  ||| |||
GGTTTGAAAAATTTCAGCAAAACTGCACGTGAATTAATTGTCCGATTGCAAAAAATTGATAATGATAACTACCCAGAGgtactgtcttctactcaattcgctgataagcacagtactgtgttaattttcttgctaacttttttttcgtggttttatgtgttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86088306|gb|DR384065.1|DR384065
EST:     GGGATCTTATAATCCAGTTGCAAAAGATTGATAGTGATAACTACCCTGAG                         ACACTTCACCGTATGTTTATCATCAATGCCGGTTCTGGTTTTAAGCTACTT
genomic: GGGATCTTATAATCCAGTTGCAAAAGATTGATAGTGATAACTACCCTGAGgtattgtcgg ... acatgtgcagACACTTCACCGTATGTTTATCATCAATGCCGGTTCTGGTTTTAAGCTACTT